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- PDB-3r2g: Crystal structure of Inosine 5' monophosphate dehydrogenase from ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3r2g | ||||||
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Title | Crystal structure of Inosine 5' monophosphate dehydrogenase from Legionella pneumophila | ||||||
![]() | Inosine 5'-monophosphate dehydrogenase | ||||||
![]() | OXIDOREDUCTASE / Structural Genomics / PSI-Biology / New York Structural Genomics Research Consortium / NYSGRC | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Agarwal, R. / Almo, S.C. / Swaminathan, S. / New York Structural Genomics Research Consortium (NYSGRC) | ||||||
![]() | ![]() Title: Crystal structure of Inosine 5' monophosphate dehydrogenase from Legionella pneumophila Authors: Agarwal, R. / Almo, S.C. / Swaminathan, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 77.4 KB | Display | ![]() |
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PDB format | ![]() | 57.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 426.5 KB | Display | ![]() |
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Full document | ![]() | 430.7 KB | Display | |
Data in XML | ![]() | 15.4 KB | Display | |
Data in CIF | ![]() | 22.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 39175.602 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: Philadelphia 1 / ATCC 33152 / DSM 7513 / Gene: Ipg2843, lpg2843 / Plasmid: pET / Production host: ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.67 Å3/Da / Density % sol: 53.91 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 8.5 Details: 0.2M NaCl, 0.1M Tris pH 8.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Oct 31, 2010 / Details: Mirrors |
Radiation | Monochromator: Si-III / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9798 Å / Relative weight: 1 |
Reflection | Resolution: 1.94→50 Å / Num. all: 29932 / Num. obs: 29932 / % possible obs: 97.6 % / Observed criterion σ(I): 0 / Redundancy: 17.9 % / Rmerge(I) obs: 0.07 / Net I/σ(I): 13.2 |
Reflection shell | Resolution: 1.94→2.01 Å / Redundancy: 9.7 % / Rmerge(I) obs: 0.6 / Mean I/σ(I) obs: 3 / Num. unique all: 2538 / % possible all: 83.5 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 29.345 Å2
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Refinement step | Cycle: LAST / Resolution: 1.941→40.7 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.941→1.991 Å / Total num. of bins used: 20
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