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- PDB-3q0x: N-terminal coiled-coil dimer domain of C. reinhardtii SAS-6 homol... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3q0x | ||||||
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Title | N-terminal coiled-coil dimer domain of C. reinhardtii SAS-6 homolog Bld12p | ||||||
![]() | Centriole protein | ||||||
![]() | STRUCTURAL PROTEIN / centrosome protein / coiled coil mediated dimer | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kitagawa, D. / Vakonakis, I. / Olieric, N. / Hilbert, M. / Keller, D. / Olieric, V. / Bortfeld, M. / Erat, M.C. / Flueckiger, I. / Goenczy, P. / Steinmetz, M.O. | ||||||
![]() | ![]() Title: Structural basis of the 9-fold symmetry of centrioles. Authors: Kitagawa, D. / Vakonakis, I. / Olieric, N. / Hilbert, M. / Keller, D. / Olieric, V. / Bortfeld, M. / Erat, M.C. / Fluckiger, I. / Gonczy, P. / Steinmetz, M.O. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 85.7 KB | Display | ![]() |
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PDB format | ![]() | 68.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 434.1 KB | Display | ![]() |
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Full document | ![]() | 436.1 KB | Display | |
Data in XML | ![]() | 15.8 KB | Display | |
Data in CIF | ![]() | 21 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 25814.262 Da / Num. of mol.: 2 / Fragment: UNP residues 1-226 / Mutation: F145E Source method: isolated from a genetically manipulated source Details: PSTCM1 pET47B derived / Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.73 Å3/Da / Density % sol: 54.91 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion / pH: 8.5 Details: 100 mM TrisHCl, pH 8.5, 200 mM MgCl2, 20% PEG8000, 2% benzamidine, vapor diffusion, temperature 298K, VAPOR DIFFUSION |
-Data collection
Diffraction | Mean temperature: 100 K | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Detector | Type: MAR225 / Detector: CCD / Date: Oct 10, 2010 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Radiation wavelength | Wavelength: 1.0015 Å / Relative weight: 1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Reflection | Resolution: 3.02→56.29 Å / Num. obs: 10395 / % possible obs: 95.8 % / Observed criterion σ(I): -3 / Redundancy: 11.23 % / Biso Wilson estimate: 59.784 Å2 / Rmerge(I) obs: 0.173 / Net I/σ(I): 10.79 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Reflection shell |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso max: 137.35 Å2 / Biso mean: 68.0898 Å2 / Biso min: 33.43 Å2
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Refine analyze | Luzzati coordinate error obs: 0.583 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.02→56.29 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3.02→3.38 Å / Total num. of bins used: 5
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