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- PDB-3p8a: Crystal Structure of a hypothetical protein from Staphylococcus aureus -
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Open data
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Basic information
Entry | Database: PDB / ID: 3p8a | ||||||
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Title | Crystal Structure of a hypothetical protein from Staphylococcus aureus | ||||||
![]() | uncharacterized protein | ||||||
![]() | UNKNOWN FUNCTION / mainly antiparallel beta sheets / alpha and beta protein | ||||||
Function / homology | ![]() Immunoglobulin-like - #4320 / Glyoxalase-like domain / Glyoxalase-like domain / 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 / 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 / Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase / Roll / Immunoglobulin-like / Sandwich / Mainly Beta / Alpha Beta Similarity search - Domain/homology | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lam, R. / Qiu, W. / Battaile, K. / Lam, K. / Romanov, V. / Chan, T. / Pai, E. / Chirgadze, N.Y. | ||||||
![]() | ![]() Title: Crystal Structure of a hypothetical protein from Staphylococcus aureus Authors: Qiu, W. / Lam, R. / Battaile, K. / Lam, K. / Romanov, V. / Chan, T. / Pai, E. / Chirgadze, N.Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 121.2 KB | Display | ![]() |
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PDB format | ![]() | 100.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
-Protein , 1 types, 2 molecules AB
#1: Protein | Mass: 32572.861 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Non-polymers , 5 types, 292 molecules ![](data/chem/img/GOL.gif)
![](data/chem/img/BTB.gif)
![](data/chem/img/PG4.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/BTB.gif)
![](data/chem/img/PG4.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | ChemComp-GOL / #3: Chemical | #4: Chemical | ChemComp-PG4 / | #5: Chemical | #6: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.92 Å3/Da / Density % sol: 35.89 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion / pH: 5.5 Details: 10 % PEG5KMME, 5 % Tacsimate, 0.1 M Bis-Tris, 0.01 M MgCl2, pH 5.5, VAPOR DIFFUSION, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 210 / Detector: CCD / Date: Oct 1, 2007 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97923 Å / Relative weight: 1 |
Reflection | Resolution: 1.95→50 Å / Num. all: 37499 / Num. obs: 37456 / % possible obs: 99.9 % / Redundancy: 12.4 % / Biso Wilson estimate: 18.56 Å2 / Rsym value: 0.0931 / Net I/σ(I): 17.4 |
Reflection shell | Resolution: 1.95→2.05 Å / Redundancy: 11.6 % / Mean I/σ(I) obs: 5.5 / Num. unique all: 5138 / Rsym value: 0.361 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 23.19 Å2
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Refine analyze | Luzzati coordinate error obs: 0.303 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.95→47.15 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.95→2.01 Å / Total num. of bins used: 18
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