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- PDB-3m1a: The Crystal Structure of a Short-chain Dehydrogenase from Strepto... -

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基本情報

登録情報
データベース: PDB / ID: 3m1a
タイトルThe Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A
要素Putative dehydrogenase
キーワードOXIDOREDUCTASE / Short / dehydrogenase / Streptomyces / avermitilis / PSI / MCSG / Structural Genomics / Midwest Center for Structural Genomics / Protein Structure Initiative
機能・相同性
機能・相同性情報


oxidoreductase activity
類似検索 - 分子機能
: / short chain dehydrogenase / Short-chain dehydrogenase/reductase, conserved site / Short-chain dehydrogenases/reductases family signature. / Short-chain dehydrogenase/reductase SDR / NAD(P)-binding Rossmann-like Domain / NAD(P)-binding domain superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta
類似検索 - ドメイン・相同性
ACETATE ION / Dehydrogenase
類似検索 - 構成要素
生物種Streptomyces avermitilis (バクテリア)
手法X線回折 / シンクロトロン / 解像度: 2 Å
データ登録者Stein, A.J. / Evdokimova, E. / Egorova, O. / Savchenko, A. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG)
引用ジャーナル: To be Published
タイトル: The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A
著者: Stein, A.J. / Evdokimova, E. / Egorova, O. / Savchenko, A. / Joachimiak, A.
履歴
登録2010年3月4日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02010年3月23日Provider: repository / タイプ: Initial release
改定 1.12011年7月13日Group: Version format compliance
改定 1.22017年11月8日Group: Refinement description / カテゴリ: software
改定 1.32021年10月13日Group: Database references / Derived calculations
カテゴリ: database_2 / pdbx_struct_conn_angle ...database_2 / pdbx_struct_conn_angle / struct_conn / struct_ref_seq_dif / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Putative dehydrogenase
B: Putative dehydrogenase
C: Putative dehydrogenase
D: Putative dehydrogenase
E: Putative dehydrogenase
F: Putative dehydrogenase
G: Putative dehydrogenase
H: Putative dehydrogenase
I: Putative dehydrogenase
J: Putative dehydrogenase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)298,54916
ポリマ-298,33910
非ポリマー2106
17,655980
1


  • 登録構造と同一
  • 登録者・ソフトウェアが定義した集合体
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area50360 Å2
ΔGint-248 kcal/mol
Surface area86700 Å2
手法PISA
2
A: Putative dehydrogenase
B: Putative dehydrogenase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)59,7144
ポリマ-59,6682
非ポリマー462
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7630 Å2
ΔGint-51 kcal/mol
Surface area20190 Å2
手法PISA
3
C: Putative dehydrogenase
F: Putative dehydrogenase


分子量 (理論値)分子数
合計 (水以外)59,6682
ポリマ-59,6682
非ポリマー00
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7360 Å2
ΔGint-47 kcal/mol
Surface area19990 Å2
手法PISA
4
D: Putative dehydrogenase
E: Putative dehydrogenase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)59,7735
ポリマ-59,6682
非ポリマー1053
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7630 Å2
ΔGint-59 kcal/mol
Surface area20030 Å2
手法PISA
5
G: Putative dehydrogenase
I: Putative dehydrogenase
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)59,7273
ポリマ-59,6682
非ポリマー591
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7500 Å2
ΔGint-39 kcal/mol
Surface area20030 Å2
手法PISA
6
H: Putative dehydrogenase
J: Putative dehydrogenase


分子量 (理論値)分子数
合計 (水以外)59,6682
ポリマ-59,6682
非ポリマー00
362
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area7110 Å2
ΔGint-36 kcal/mol
Surface area19590 Å2
手法PISA
単位格子
Length a, b, c (Å)136.638, 202.779, 106.339
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number18
Space group name H-MP21212
Components on special symmetry positions
IDモデル要素
11B-550-

HOH

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要素

#1: タンパク質
Putative dehydrogenase


分子量: 29833.893 Da / 分子数: 10 / 変異: A238T / 由来タイプ: 組換発現
由来: (組換発現) Streptomyces avermitilis (バクテリア)
: MA-4680 / 遺伝子: SAV770, SAV_770 / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21(DE3) / 参照: UniProt: Q82PV2
#2: 化合物
ChemComp-NA / SODIUM ION / ナトリウムカチオン


分子量: 22.990 Da / 分子数: 4 / 由来タイプ: 合成 / : Na
#3: 化合物 ChemComp-ACT / ACETATE ION / 酢酸イオン


分子量: 59.044 Da / 分子数: 2 / 由来タイプ: 合成 / : C2H3O2
#4: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 980 / 由来タイプ: 天然 / : H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.48 Å3/Da / 溶媒含有率: 50.5 %
結晶化温度: 289 K / pH: 6.5
詳細: 30% PEG 8000, 0.1M Bis Tris pH 6.5, 0.2M Sodium acetate, 2% DMSO, VAPOR DIFFUSION, SITTING DROP, temperature 289K

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: APS / ビームライン: 19-ID / 波長: 0.9794
検出器タイプ: ADSC QUANTUM 315 / 検出器: CCD / 日付: 2009年12月17日
放射モノクロメーター: DOUBLE CRYSTAL / プロトコル: SINGLE WAVELENGTH / 散乱光タイプ: x-ray
放射波長波長: 0.9794 Å / 相対比: 1
反射解像度: 2→50 Å / Num. obs: 195448 / % possible obs: 98.6 % / 冗長度: 4.5 % / Rmerge(I) obs: 0.083 / Net I/σ(I): 7.2
反射 シェル解像度: 2→2.07 Å / 冗長度: 4.4 % / Rmerge(I) obs: 0.574 / % possible all: 96.5

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解析

ソフトウェア
名称バージョン分類NB
DENZOデータ削減
SCALEPACKデータスケーリング
REFMAC精密化
PDB_EXTRACT3.004データ抽出
HKL-3000データ削減
HKL-3000データスケーリング
SHELX位相決定
直接法位相決定
BUCCANEER位相決定
Cootモデル構築
精密化解像度: 2→49.55 Å / Cor.coef. Fo:Fc: 0.952 / Cor.coef. Fo:Fc free: 0.928 / SU B: 10.168 / SU ML: 0.128 / 交差検証法: THROUGHOUT / ESU R: 0.183 / ESU R Free: 0.167 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor反射数%反射Selection details
Rfree0.242 9845 5 %RANDOM
Rwork0.197 ---
obs0.2 185534 98.5 %-
溶媒の処理イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK
原子変位パラメータBiso mean: 34.97 Å2
Baniso -1Baniso -2Baniso -3
1-0.09 Å20 Å20 Å2
2---0.23 Å20 Å2
3---0.14 Å2
精密化ステップサイクル: LAST / 解像度: 2→49.55 Å
タンパク質核酸リガンド溶媒全体
原子数19913 0 12 980 20905
拘束条件
Refine-IDタイプDev idealDev ideal target
X-RAY DIFFRACTIONr_bond_refined_d0.0110.02220252
X-RAY DIFFRACTIONr_bond_other_d
X-RAY DIFFRACTIONr_angle_refined_deg1.271.96327559
X-RAY DIFFRACTIONr_angle_other_deg
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.21252721
X-RAY DIFFRACTIONr_dihedral_angle_2_deg32.89623.218867
X-RAY DIFFRACTIONr_dihedral_angle_3_deg16.014153010
X-RAY DIFFRACTIONr_dihedral_angle_4_deg17.40215187
X-RAY DIFFRACTIONr_chiral_restr0.0860.23219
X-RAY DIFFRACTIONr_gen_planes_refined0.0060.02115587
X-RAY DIFFRACTIONr_gen_planes_other
X-RAY DIFFRACTIONr_nbd_refined
X-RAY DIFFRACTIONr_nbd_other
X-RAY DIFFRACTIONr_nbtor_refined
X-RAY DIFFRACTIONr_nbtor_other
X-RAY DIFFRACTIONr_xyhbond_nbd_refined
X-RAY DIFFRACTIONr_xyhbond_nbd_other
X-RAY DIFFRACTIONr_metal_ion_refined
X-RAY DIFFRACTIONr_metal_ion_other
X-RAY DIFFRACTIONr_symmetry_vdw_refined
X-RAY DIFFRACTIONr_symmetry_vdw_other
X-RAY DIFFRACTIONr_symmetry_hbond_refined
X-RAY DIFFRACTIONr_symmetry_hbond_other
X-RAY DIFFRACTIONr_symmetry_metal_ion_refined
X-RAY DIFFRACTIONr_symmetry_metal_ion_other
X-RAY DIFFRACTIONr_mcbond_it0.4671.513393
X-RAY DIFFRACTIONr_mcbond_other
X-RAY DIFFRACTIONr_mcangle_it0.787221175
X-RAY DIFFRACTIONr_scbond_it1.47636859
X-RAY DIFFRACTIONr_scangle_it2.2354.56365
X-RAY DIFFRACTIONr_rigid_bond_restr
X-RAY DIFFRACTIONr_sphericity_free
X-RAY DIFFRACTIONr_sphericity_bonded
LS精密化 シェル解像度: 2→2.05 Å / Total num. of bins used: 20
Rfactor反射数%反射
Rfree0.31 721 -
Rwork0.262 12804 -
obs--93.77 %
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
14.9441.521-0.32673.71560.18975.25440.08550.07760.32430.0195-0.05890.1464-0.3305-0.1936-0.02660.21920.06670.01110.07150.00540.1868-61.0317-16.881730.1533
21.98570.3695-0.6823.69-1.59231.8533-0.0138-0.32510.26190.18520.03430.2943-0.3125-0.1854-0.02040.2410.03910.00180.1693-0.01380.198-62.0377-14.808134.0205
33.9798-1.0574-0.10246.01061.79824.6581-0.094-0.58920.19690.19990.0828-0.2131-0.28510.2970.01120.2904-0.0099-0.03060.3127-0.00580.2131-54.1496-18.522940.627
43.17950.7239-0.48112.1864-0.62572.417-0.0422-0.3535-0.15180.1028-0.0226-0.06520.13720.13390.06470.18040.02360.00250.14770.01790.1751-59.2577-26.472331.1084
53.43-0.4902-2.2854.1999-0.6424.76340.094-0.02660.03580.2728-0.0678-0.4574-0.01610.2369-0.02630.1778-0.0193-0.00840.12470.01450.2125-35.3578-19.305515.6581
67.49741.2816-2.26227.04282.99733.62690.1836-0.5785-0.21280.2915-0.0262-0.25060.15460.1159-0.15740.20280.0222-0.00730.06410.04440.1515-42.7085-25.403118.9893
716.93453.2418-2.66580.6285-0.45671.0735-0.02990.0978-0.1502-0.0173-0.0086-0.01540.135-0.23080.03850.22850.01940.01390.09340.01780.1955-60.1192-28.979320.7062
814.7673-4.3108-6.265320.5103-2.519.43130.1778-0.363-0.973-0.2623-0.63750.29260.7428-0.66270.45970.2351-0.08130.00470.2641-0.01220.2475-73.0593-27.716220.2517
910.76313.8525-5.41781.7073-1.71784.4830.1428-0.10480.29-0.0524-0.08120.0692-0.17810.1061-0.06160.17340.0252-0.01520.01270.00870.2472-52.5037-13.502614.8705
1010.90874.3621-0.97052.6798-2.02892.96510.1681-0.59630.71680.2354-0.11480.2881-0.3254-0.1405-0.05330.21240.01690.03960.0879-0.00540.2104-42.058-14.50914.0363
1111.93243.21480.36982.35730.70560.2602-0.01680.03540.2985-0.127-0.05920.2551-0.059-0.03930.0760.18170.02920.00550.06220.02350.1737-57.2022-21.057411.2459
122.95451.8766-1.98684.9195-0.72541.8398-0.29720.16180.1666-0.26250.19390.5124-0.0611-0.27230.10330.22110.0995-0.04670.1177-0.00770.2344-64.7866-17.680415.5673
1313.73424.88080.11214.4157-19.548730.2863-0.2674-0.48360.43330.1621-0.3168-0.1955-0.26280.20420.58420.67790.0070.11380.1049-0.1420.6365-50.4335-4.576530.2988
1418.9442-1.9647-10.23282.40932.532814.0632-0.19340.06330.06450.21640.2316-0.15290.09010.2346-0.03820.25450.0184-0.03410.08090.01550.2075-36.1259-14.176523.979
1513.097-4.7261-6.91838.06913.30467.4311-0.0666-0.17120.49640.1850.039-0.4279-0.24060.60210.02760.2514-0.0681-0.0070.10940.03580.2732-30.8546-8.670914.4842
1625.9683-32.6459-7.831941.225610.85288.2827-1.2194-0.8068-0.57921.39671.03220.8345-0.14950.72960.18720.5007-0.03290.10560.1756-0.06610.7171-40.7985-4.009422.0838
177.44070.57541.33073.63850.27975.16-0.0154-0.42790.15470.1776-0.05250.0994-0.35120.26470.0680.2020.04150.01420.0904-0.00940.2307-62.2723-6.238225.0196
186.73811.7966-3.03993.1055-0.35584.81460.0745-0.15810.37810.0755-0.02750.1644-0.1081-0.074-0.0470.20430.0611-0.04120.04240.02810.2369-58.4897-6.711813.0062
190.49071.39312.00656.19922.009623.52720.01330.110.1062-0.11360.1388-0.0569-0.1952-0.105-0.15210.23970.04460.00010.12620.13990.3257-50.1593-6.6627-3.8041
203.261-3.09280.36867.1641-0.47252.2164-0.10140.41210.0441-0.617-0.08390.604-0.1437-0.04540.18540.2972-0.0286-0.02470.28150.06760.2141-50.8469-16.0116-15.6347
218.41290.49291.17994.64410.8783.2147-0.13020.57010.3726-0.33390.18670.0282-0.10390.103-0.05660.20610.0210.01620.12570.01620.1717-35.0383-28.3799-9.1202
222.6614-0.09520.15133.8207-0.72173.3012-0.15950.376-0.1015-0.36830.07720.0550.24390.00420.08230.223-0.01090.01230.1925-0.03320.1978-35.5903-31.7158-11.7911
236.96564.7323-2.92417.9417-4.08374.5828-0.15190.45970.0971-0.65040.22720.3150.27940.0166-0.07530.3572-0.0240.02560.2616-0.09220.2994-34.0637-40.3373-13.594
244.3207-1.3861-5.40431.5156-0.265212.0878-0.3501-0.0159-0.29970.15130.08050.02780.29730.17850.26960.1934-0.03690.02840.107-0.02120.2743-35.0271-37.92890.4108
254.5423-0.83350.43012.03780.88260.8141-0.041-0.0091-0.17770.12140.0403-0.15860.07260.1730.00070.14940.00680.03580.1286-0.010.1978-27.6315-32.1426-0.3192
264.0159-0.48810.17310.0771-0.01140.0138-0.0390.1971-0.19030.0530.01820.04310.02980.02090.02080.232-0.00210.05590.1854-0.00280.2416-52.5414-31.9942.8889
2721.0438-1.1752-2.43443.02251.03077.40080.19170.0931-0.91120.2283-0.0036-0.00920.4277-0.4058-0.18820.2394-0.01470.02940.04510.02230.2635-57.2184-36.0312.7656
2810.11972.5643-6.39275.13122.54297.9066-0.04270.1242-0.34940.1878-0.0976-0.15350.2183-0.19060.14020.18910.0384-0.03550.01660.00290.2365-47.485-32.31979.0409
2914.57277.1726-4.2563.7099-2.32451.55720.1463-0.16680.39030.2538-0.09970.1214-0.28050.1392-0.04660.239-0.00240.01760.1976-0.02210.231-32.1893-24.97835.6577
3015.01941.7765-2.16591.76130.04780.4103-0.13920.3803-0.137-0.10950.136-0.0649-0.09090.0040.00320.2665-0.05570.01420.15710.05010.1498-38.7575-20.6285-2.221
316.7061-0.1959-0.62132.6784-0.5831.607-0.13590.4246-0.0256-0.31230.05210.12470.0828-0.02850.08380.18340.0190.00920.0539-0.00220.1435-55.1784-24.05144.1712
3215.37267.6690.88915.53660.21910.1334-0.1110.16880.0412-0.10730.1449-0.1118-0.0969-0.0512-0.03390.27190.05790.0310.09470.03720.1707-39.5162-15.65115.3229
332.49410.51070.78743.26821.06782.4042-0.14060.06680.1236-0.3271-0.05250.1779-0.16160.01280.19310.21460.01760.05490.11610.07750.1503-43.5516-22.5917-7.5219
3416.0937-4.1851-12.2372.63484.516217.18250.05160.43090.2710.1611-0.15610.1931-0.1546-0.55280.10450.2001-0.01690.03390.0814-0.00040.2647-59.0363-37.47490.8203
3512.4696-0.6403-4.27117.56171.18731.9075-0.35970.9454-0.89920.1057-0.46861.10940.2265-0.71620.82830.2472-0.09840.09680.5161-0.46560.6717-69.1165-31.13913.383
360.3732.1779-2.138312.8021-12.549912.3112-0.07220.11530.0772-0.21620.48510.43040.2524-0.5343-0.41280.4252-0.0433-0.01110.4753-0.03680.38-61.0253-30.1712-9.1156
379.92176.0377-0.13785.3159-0.15171.1779-0.00970.6876-0.0015-0.3932-0.0756-0.1254-0.12750.10050.08530.24680.01250.0220.26610.05530.1954-43.6776-22.4354-15.6197
385.4663-0.5892-0.63091.9751.13692.5256-0.2020.33570.1751-0.26850.09860.0428-0.07650.11460.10340.25330.001-0.02280.09870.0830.1822-48.8844-14.7815-7.0513
396.0647-3.991-4.54779.28949.395319.0794-0.04890.06630.1422-0.07360.09050.0515-0.0434-0.2092-0.04170.23940.0338-0.04160.03090.05780.265-61.3302-6.12885.2147
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415.75411.4959-3.35884.6332-3.15383.1941-0.0172-0.58350.2006-0.1375-0.2668-0.75380.0530.45450.2840.2727-0.15790.10320.4021-0.17670.43770.2242-16.674221.2222
425.1456-1.33480.59223.7278-0.67722.06050.01090.0550.3390.04570.07670.1075-0.3792-0.1762-0.08760.2694-0.02520.03380.132-0.01390.2144-16.6135-14.114722.1769
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4411.3354-0.84782.41333.326-2.29287.6216-0.15140.47980.7092-0.4342-0.1064-0.0748-0.73810.41370.25780.3473-0.0503-0.00130.32080.01170.2328-14.5434-16.717911.0841
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1241.5434-0.5165-1.04042.61960.4243.21550.14130.29530.2764-0.14350.06530.3681-0.1089-0.6984-0.20660.25410.0844-0.01070.67830.11150.3905-39.2913-62.608354.8901
1253.11960.4461-0.58482.52280.19961.15460.26760.50650.1595-0.1384-0.07910.2433-0.1342-0.4508-0.18850.22360.07590.0190.41210.06520.2531-34.841-63.780961.123
1260.2007-0.14560.4248.2712-3.62742.28950.1250.050.0375-0.18770.10780.67260.2639-0.0939-0.23280.28360.06560.01470.6594-0.04780.2865-13.7289-69.129440.7966
1274.35433.1221-1.883510.0341.25446.8074-0.04820.7833-0.1688-0.74490.260.41960.0058-0.3071-0.21180.22620.0914-0.05450.4525-0.01440.2916-21.2761-63.174145.073
1286.9626-2.1064-8.9956.57156.053213.69230.42420.48740.59220.16160.09990.3055-0.5822-0.3741-0.52410.32550.1310.08440.44410.13520.3329-29.0341-55.509657.2597
12911.23511.22629.91450.3597-0.584721.0524-0.0476-0.19060.62690.09950.00230.1343-0.797-0.36810.04530.45440.13610.19450.35510.09380.4814-33.219-53.171169.7694
1306.35020.1544-3.94630.6466-0.6963.03120.13530.21190.1056-0.00550.0390.0504-0.0459-0.1505-0.17430.20580.0237-0.04230.2766-0.04030.2232-17.1215-68.257658.9291
1315.1339-3.9041-7.11883.86964.868916.583-0.08090.6797-0.59220.217-0.02860.23590.2054-0.64830.10950.14610.0884-0.06750.5384-0.17460.3053-14.7827-67.948651.0356
1323.9798-2.0641-3.93984.88084.52985.94430.1758-0.09710.20410.5660.03920.192-0.05750.0005-0.2150.390.07530.13790.25260.05110.2693-18.6634-56.642164.1573
1337.2497-5.2216-4.503611.83746.18144.6740.24450.14050.29690.38950.109-0.0628-0.19-0.2628-0.35360.25460.04950.03340.24280.04040.1725-22.3393-62.950367.4169
1345.5095-0.4049-2.58030.09780.01921.64540.30450.50860.0702-0.09270.06590.13330.0913-0.5179-0.37040.4291-0.1421-0.12570.5438-0.02360.4562-23.2244-79.732750.0226
1355.49731.3688-0.95051.0421-3.31515.0614-0.15230.3278-0.6065-0.22960.0005-0.10820.6486-0.39950.15180.41090.05390.00450.3722-0.12020.3154-6.5555-79.091341.0172
1362.96832.6658-6.66014.2473-6.850315.7231-0.20470.0088-0.12-0.52090.23560.33390.646-0.5518-0.03080.5696-0.0203-0.1780.6161-0.04460.506-15.416-83.10250.7202
1375.2577-0.3117-1.68887.58663.64157.2933-0.0433-0.0381-0.35580.27790.36650.0440.3623-0.1203-0.32320.2062-0.0097-0.01850.27990.02230.2542-25.7775-75.045370.0015
1386.7548-1.9086-2.1054.3871-0.51753.0252-0.0359-0.1794-0.16030.20860.05060.21070.08210.0485-0.01470.190.0006-0.04190.2201-0.03050.1858-13.9992-72.126366.8035
13912.70385.3512.12978.0596-0.94725.93940.0324-0.1806-0.19490.069-0.2166-0.055-0.25650.3330.18420.22850.0311-0.03720.25840.00020.1992.4272-67.070862.4396
1407.7226-4.7381-0.107113.70895.186314.88520.3297-0.10640.8140.19-0.3194-0.4591-0.6495-0.1284-0.01030.2867-0.12150.00520.39520.03180.26419.6927-55.439761.1461
1410.89351.43830.92184.5784-0.04074.31440.0826-0.2845-0.0856-0.1556-0.0250.3589-0.0278-0.4456-0.05760.26990.032-0.03470.44450.0660.3222-58.1408-84.918229.8366
1422.72731.087-0.49183.12862.09692.27540.04480.096-0.04280.1292-0.03220.3236-0.0162-0.2425-0.01260.27940.02240.03720.5480.17130.4714-61.8572-82.012230.6046
14312.57494.5479-3.508415.8512-7.09520.64640.1921-0.4597-0.4538-0.94950.27742.17591.8359-0.7877-0.46950.42140.0157-0.08620.5720.08160.6811-68.803-80.466429.7487
1443.3473-1.50930.29280.78820.01516.44130.1804-0.4850.5441-0.00690.0554-0.1593-0.2748-0.0745-0.23580.36790.00820.11880.5465-0.05940.3634-52.9341-72.317333.9828
1452.5796-0.0992-0.53362.76950.96533.50430.1202-0.44520.15330.23950.13190.1546-0.0518-0.1756-0.25210.30420.0147-0.01420.43710.05140.2673-54.0734-81.420234.571
1468.42823.37693.466212.07035.09492.7230.04910.18350.2628-0.2487-0.0477-0.0001-0.11060.0334-0.00140.32750.11510.04120.2822-0.01650.2995-35.2652-78.843511.5862
1473.84931.1088-1.9840.7424-0.56994.74570.33-0.29570.28850.0764-0.06610.1501-0.27750.0138-0.26390.27920.0232-0.01920.2823-0.03110.2919-41.9439-77.398129.5261
1480.55313.5092-0.168325.2398-5.58897.16090.1594-0.0451-0.06831.0028-0.5098-0.6254-0.01050.77130.35040.4504-0.1011-0.04980.81040.03290.2905-49.392-84.932148.0538
1492.7747-0.3907-2.76710.50250.03983.25790.05110.0581-0.1314-0.05080.03690.1810.2563-0.2159-0.0880.4054-0.0181-0.11290.350.03680.2371-42.5953-90.462423.5376
1502.6006-0.196-1.44170.69880.48631.2420.0829-0.5145-0.18310.1688-0.00110.04340.22740.1258-0.08180.3391-0.0234-0.120.40240.05340.2847-41.2926-89.896233.4011
15171.0929-14.643754.7983.1634-11.502142.5618-1.76740.21631.15450.54560.4216-0.4189-1.7188-0.26061.34580.73030.1512-0.33281.0542-0.0980.5558-54.9812-91.822916.9165
15228.264510.17-3.22587.9473-7.692910.32410.23060.5698-0.9268-0.78250.2420.02111.2808-0.1865-0.47270.493-0.0203-0.01270.4581-0.02210.4871-59.0332-85.582517.1534
15330.99442.1983-25.42665.6595.374430.22670.37460.05870.6293-0.11080.3169-0.0735-0.44540.365-0.69160.29390.1124-0.0870.19330.07540.2873-42.9064-79.39097.3253
15410.0184.1539-1.75145.2807-1.68716.1913-0.13890.28270.0533-0.76380.3343-0.09380.3950.2286-0.19540.36840.0788-0.03320.2276-0.06140.2421-36.3475-87.05072.5172
15522.989225.0218-11.858986.2609-20.02966.97740.97791.2245-0.316-1.0362-0.81542.7615-0.2271-0.3671-0.16260.40730.149-0.15850.3924-0.07340.4312-46.9285-88.77646.9929
1561.87751.3845-4.61121.4162-1.576720.4039-0.363-0.0353-0.2445-0.4848-0.3689-0.15740.2428-1.21550.73190.55390.1338-0.07590.65570.14790.5713-57.91-95.850320.1144
1574.68662.18461.24891.8709-0.07254.20480.05-0.6033-0.09830.1672-0.02490.37750.7674-0.1548-0.02510.48230.0494-0.01890.37110.14920.4078-51.2614-98.482434.7367
15812.2562-3.087-3.19971.91971.96083.18760.03260.2388-0.1353-0.16880.06350.12280.3655-0.0277-0.09610.42610.0191-0.11480.26110.03760.2981-41.0981-100.83619.8182
1597.92921.85974.01082.91863.48234.63730.1585-0.7489-0.26480.11280.0637-0.11910.196-0.1398-0.22230.44220.1163-0.06290.4377-0.01280.3495-22.7922-104.58121.5011
16023.3598-6.8089-1.029813.5812-5.62693.10340.4578-2.10090.74930.5617-0.651-0.8122-0.22570.82760.19320.87610.331-0.3170.9238-0.22610.4855-12.8194-100.744529.5288
1615.09890.55943.59063.9508-1.70643.66980.07660.0310.24290.5715-0.2621-0.0311-0.30210.16250.18560.36970.02810.12780.39610.08340.32424.0378-49.971541.5526
1626.1358-3.2260.91745.11160.02364.66930.36480.26070.6206-0.1227-0.1546-0.4435-0.40560.5832-0.21020.3609-0.02760.12060.40960.09390.36767.6727-48.126439.6815
1636.4758-9.4529-5.440318.51037.67354.76810.1640.04110.09420.8119-0.149-0.0669-0.42940.2973-0.0150.8926-0.16270.14540.7690.21410.5635.9498-39.718635.3584
1642.57891.4984-1.61882.5178-1.05795.00190.09210.62810.4246-0.3230.14010.1986-0.0408-0.5144-0.23220.39430.11310.06070.5910.08180.2708-5.3473-50.627331.6041
1651.8534-0.70151.05383.202-0.32961.18510.05320.20110.0824-0.0009-0.0331-0.0717-0.070.0095-0.020.30610.0760.06380.40830.02030.23690.6827-54.110538.9172
1666.5803-0.14060.90114.4038-0.42067.09950.24280.05030.7106-0.0186-0.02210.4671-0.2468-0.4461-0.22070.34610.0870.13180.29510.03340.3686-20.6953-47.954356.3565
1674.7921-2.19670.09392.69722.98235.52410.07140.58290.4307-0.2496-0.1711-0.0446-0.49240.04870.09970.32310.14450.13020.40810.20790.4087-16.2995-52.183847.2505
1689.0175-9.2607-5.08910.18844.69525.62990.18640.3979-0.1953-0.28180.02540.04020.1848-0.3042-0.21180.30050.04710.01820.533-0.00680.2413-5.1654-61.152236.2696
16910.8569-3.52318.25881.8256-0.759611.83080.84980.7737-0.5537-0.3322-0.48660.16060.7309-0.0215-0.36320.44650.04430.10750.4964-0.08930.31524.4918-67.738134.3199
1701.3308-0.3196-0.87560.08250.2562.86020.03240.03340.026-0.006-0.0301-0.0323-0.1972-0.0326-0.00230.26370.02390.04730.2475-0.00130.2605-3.1362-57.057953.3524
1711.3245-0.2517-3.38586.4657-0.997910.06130.39150.00640.31480.0731-0.0514-0.2249-0.53630.2778-0.34010.42410.12030.20780.30010.05570.3354-12.7907-51.348660.5011
1722.438-0.1747-1.64571.2915-1.1472.90570.20470.3173-0.0143-0.004-0.0555-0.14270.0392-0.1575-0.14930.19150.0454-0.03170.3087-0.02890.2354-2.909-63.36748.9656
17312.00433.10036.67170.8461.50246.4689-0.53520.67080.7276-0.13420.22740.1155-0.07660.82910.30780.6390.05530.05180.40070.04780.71992.1189-40.129252.5028
17438.87948.2229-20.98719.86630.638320.8445-0.0737-0.05880.34030.1755-0.19270.5661-0.2248-0.62480.26650.38410.11320.04620.22810.09610.2908-18.816-40.642357.9903
17512.1459-0.9938-1.78020.08360.14270.27420.136-0.29080.54760.01750.0002-0.0478-0.11730.0129-0.13620.76220.0520.32560.4193-0.01450.4822-18.19-44.092967.9231
17616.257-3.2038-6.26931.68051.69952.6961-0.2092-0.92880.67760.0770.3890.1048-0.12190.4399-0.17980.6685-0.02270.08620.51620.06110.4666-1.8674-42.453360.221
1775.5514-0.4114-2.16219.49642.69164.77820.07250.14290.10720.22290.0465-0.8171-0.13260.4633-0.11910.2058-0.0207-0.00480.44010.04150.271811.4335-57.572949.7114
1782.59091.3449-1.64181.1262-0.80652.77220.2127-0.19860.1110.2038-0.189-0.0383-0.45730.2896-0.02370.256-0.0104-0.02060.2599-0.00940.1995-0.3117-60.145562.769
1799.22494.93132.27126.71-0.18343.8812-0.0694-0.22410.00280.4743-0.1088-0.0352-0.1797-0.05840.17810.22020.0123-0.0210.2088-0.01440.2256-13.3453-73.159272.9932
18029.1584-2.20841.514830.9491-8.17552.1913-1.09690.4214-1.6975-1.80381.26840.60480.4486-0.3326-0.17150.415-0.11310.04120.5774-0.14410.4182-18.3648-83.721567.1801
1813.9092-1.72192.08123.187-1.66231.33970.02180.2420.0425-0.2511-0.0264-0.05550.07540.13330.00460.30890.0451-0.00870.6603-0.22910.3866-11.6234-80.948517.8261
18224.1021-26.012311.296236.2563-3.153615.31240.56750.2812-1.1438-0.5697-0.19741.3034-0.01020.0675-0.37010.54660.1721-0.02030.6566-0.24150.5299-10.6331-84.209327.6718
1830.4016-0.91520.40152.4337-1.38852.22090.0416-0.09640.0256-0.05870.1553-0.3107-0.16890.4666-0.19690.30040.04110.01230.6624-0.20290.4611-7.6201-78.682321.1873
18415.2160.3849-0.957214.117712.730417.85810.14110.3783-0.18760.30210.7789-1.61450.45271.4615-0.920.3160.1014-0.05530.7595-0.19620.7399-0.6152-76.98821.3462
1853.87272.31080.752.3156-0.82872.3207-0.04950.31920.59970.05870.11790.1968-0.18350.229-0.06840.35280.0170.04220.5625-0.09460.4937-16.7299-69.935517.1818
1863.82861.3435-1.36752.8793-1.49619.95460.19570.1821-0.0241-0.12960.1331-0.2504-0.23550.5985-0.32880.29220.0755-0.01280.4264-0.1230.2745-15.9823-79.990116.9118
1875.11450.8425-0.87115.7959-0.76920.33360.323-0.26140.08360.1833-0.14960.0874-0.104-0.0239-0.17340.3445-0.0208-0.00270.5033-0.05890.2438-32.9303-80.352439.2056
1884.5802-0.748-0.06032.525-2.68823.03440.2366-0.46320.38890.2522-0.11980.0187-0.33960.2523-0.11670.29390.003-0.01130.3814-0.1110.289-29.8043-76.414628.365
1895.064-1.8074-3.916610.50921.82233.06060.19650.45110.1406-0.3425-0.09370.5734-0.2248-0.3142-0.10280.32750.04680.00590.451-0.07330.3223-24.5304-76.71412.0823
1902.7427-6.0939-1.387613.60953.10710.71230.40840.20150.1006-0.7579-0.3483-0.1617-0.1446-0.0621-0.06010.51630.1310.04510.6231-0.03390.4276-20.0965-81.93133.3017
1914.42120.8012-2.56890.1793-0.3851.70640.22340.07050.00450.11190.0501-0.11040.0825-0.0109-0.27360.41410.1027-0.17460.4048-0.0650.3881-25.3741-90.090726.0557
1922.0995-0.0635-1.36881.1131-0.17062.890.0933-0.0064-0.0516-0.0226-0.0059-0.07420.15510.2077-0.08740.27930.089-0.0840.3117-0.05550.2521-27.3219-88.736919.34
19328.048715.0358-15.988610.447-16.467135.29660.37230.6296-1.15760.28470.1817-0.3203-0.4125-0.0021-0.5540.46020.1843-0.15360.6068-0.15960.7048-9.505-89.29434.7051
19432.98187.6372-21.68967.3663-4.387318.87970.0253-0.7548-0.26730.18760.1246-0.0470.27270.494-0.14980.3346-0.0146-0.1470.3926-0.10970.2568-23.3867-80.198541.3699
19510.2171-2.8751-1.22932.92882.03261.49010.1157-0.093-0.17070.4784-0.11590.03310.3939-0.09360.00020.4450.0032-0.09020.67550.10290.2689-32.8396-87.8448.6501
19623.7856-26.09988.385928.7225-9.16692.97710.91230.20440.2153-1.1873-0.616-0.4930.40010.0468-0.29630.6024-0.1114-0.13550.77890.14041.1169-20.9287-89.585243.3575
1973.19232.0042-1.32862.02130.23692.9803-0.108-0.00770.0309-0.23260.2464-0.29890.01440.3631-0.13840.37740.1396-0.0270.3523-0.11430.3938-14.6193-95.294318.3378
19811.75584.119-2.00021.8104-1.0761.1014-0.0507-0.4281-0.39450.10090.0711-0.12960.11320.1154-0.02040.42880.1096-0.10850.4-0.0030.3337-27.6376-101.214129.6851
19916.9627-0.1549-6.07389.6138-0.47772.2093-0.26340.0829-1.0109-0.0795-0.04670.2060.0654-0.02490.31010.50670.034-0.07390.34510.06390.3913-46.3073-105.684428.411
20013.75756.2511-6.68878.6576.121218.28490.0511.44330.7629-0.3705-0.24330.926-0.4351-1.85790.19230.5928-0.0044-0.14450.64330.03770.4369-54.7243-102.387120.2685
精密化 TLSグループ
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A4 - 18
2X-RAY DIFFRACTION2A19 - 36
3X-RAY DIFFRACTION3A37 - 49
4X-RAY DIFFRACTION4A50 - 89
5X-RAY DIFFRACTION5A90 - 100
6X-RAY DIFFRACTION6A101 - 110
7X-RAY DIFFRACTION7A111 - 125
8X-RAY DIFFRACTION8A126 - 131
9X-RAY DIFFRACTION9A132 - 145
10X-RAY DIFFRACTION10A146 - 152
11X-RAY DIFFRACTION11A153 - 168
12X-RAY DIFFRACTION12A169 - 182
13X-RAY DIFFRACTION13A183 - 189
14X-RAY DIFFRACTION14A190 - 199
15X-RAY DIFFRACTION15A200 - 211
16X-RAY DIFFRACTION16A212 - 222
17X-RAY DIFFRACTION17A223 - 236
18X-RAY DIFFRACTION18A237 - 258
19X-RAY DIFFRACTION19A259 - 268
20X-RAY DIFFRACTION20A269 - 278
21X-RAY DIFFRACTION21B4 - 17
22X-RAY DIFFRACTION22B18 - 37
23X-RAY DIFFRACTION23B38 - 52
24X-RAY DIFFRACTION24B53 - 63
25X-RAY DIFFRACTION25B64 - 84
26X-RAY DIFFRACTION26B85 - 95
27X-RAY DIFFRACTION27B96 - 102
28X-RAY DIFFRACTION28B103 - 110
29X-RAY DIFFRACTION29B111 - 126
30X-RAY DIFFRACTION30B127 - 141
31X-RAY DIFFRACTION31B142 - 157
32X-RAY DIFFRACTION32B158 - 169
33X-RAY DIFFRACTION33B170 - 190
34X-RAY DIFFRACTION34B191 - 199
35X-RAY DIFFRACTION35B200 - 211
36X-RAY DIFFRACTION36B212 - 222
37X-RAY DIFFRACTION37B223 - 234
38X-RAY DIFFRACTION38B235 - 258
39X-RAY DIFFRACTION39B259 - 268
40X-RAY DIFFRACTION40B269 - 277
41X-RAY DIFFRACTION41C2 - 8
42X-RAY DIFFRACTION42C9 - 21
43X-RAY DIFFRACTION43C22 - 37
44X-RAY DIFFRACTION44C38 - 52
45X-RAY DIFFRACTION45C53 - 79
46X-RAY DIFFRACTION46C80 - 91
47X-RAY DIFFRACTION47C92 - 100
48X-RAY DIFFRACTION48C101 - 110
49X-RAY DIFFRACTION49C111 - 128
50X-RAY DIFFRACTION50C129 - 147
51X-RAY DIFFRACTION51C148 - 168
52X-RAY DIFFRACTION52C169 - 182
53X-RAY DIFFRACTION53C183 - 189
54X-RAY DIFFRACTION54C190 - 200
55X-RAY DIFFRACTION55C201 - 210
56X-RAY DIFFRACTION56C211 - 222
57X-RAY DIFFRACTION57C223 - 238
58X-RAY DIFFRACTION58C239 - 253
59X-RAY DIFFRACTION59C254 - 268
60X-RAY DIFFRACTION60C269 - 278
61X-RAY DIFFRACTION61D2 - 22
62X-RAY DIFFRACTION62D23 - 38
63X-RAY DIFFRACTION63D39 - 51
64X-RAY DIFFRACTION64D52 - 76
65X-RAY DIFFRACTION65D77 - 89
66X-RAY DIFFRACTION66D90 - 100
67X-RAY DIFFRACTION67D101 - 108
68X-RAY DIFFRACTION68D109 - 123
69X-RAY DIFFRACTION69D124 - 129
70X-RAY DIFFRACTION70D130 - 154
71X-RAY DIFFRACTION71D155 - 181
72X-RAY DIFFRACTION72D182 - 194
73X-RAY DIFFRACTION73D195 - 200
74X-RAY DIFFRACTION74D201 - 210
75X-RAY DIFFRACTION75D211 - 215
76X-RAY DIFFRACTION76D216 - 227
77X-RAY DIFFRACTION77D228 - 255
78X-RAY DIFFRACTION78D256 - 268
79X-RAY DIFFRACTION79D269 - 273
80X-RAY DIFFRACTION80D274 - 278
81X-RAY DIFFRACTION81E5 - 18
82X-RAY DIFFRACTION82E19 - 34
83X-RAY DIFFRACTION83E35 - 39
84X-RAY DIFFRACTION84E40 - 50
85X-RAY DIFFRACTION85E51 - 84
86X-RAY DIFFRACTION86E85 - 113
87X-RAY DIFFRACTION87E114 - 123
88X-RAY DIFFRACTION88E124 - 129
89X-RAY DIFFRACTION89E130 - 142
90X-RAY DIFFRACTION90E143 - 151
91X-RAY DIFFRACTION91E152 - 168
92X-RAY DIFFRACTION92E169 - 184
93X-RAY DIFFRACTION93E185 - 191
94X-RAY DIFFRACTION94E192 - 199
95X-RAY DIFFRACTION95E200 - 210
96X-RAY DIFFRACTION96E211 - 220
97X-RAY DIFFRACTION97E221 - 242
98X-RAY DIFFRACTION98E243 - 257
99X-RAY DIFFRACTION99E258 - 268
100X-RAY DIFFRACTION100E269 - 278
101X-RAY DIFFRACTION101F5 - 18
102X-RAY DIFFRACTION102F19 - 31
103X-RAY DIFFRACTION103F32 - 37
104X-RAY DIFFRACTION104F38 - 50
105X-RAY DIFFRACTION105F51 - 64
106X-RAY DIFFRACTION106F65 - 84
107X-RAY DIFFRACTION107F85 - 94
108X-RAY DIFFRACTION108F95 - 100
109X-RAY DIFFRACTION109F101 - 122
110X-RAY DIFFRACTION110F123 - 140
111X-RAY DIFFRACTION111F141 - 156
112X-RAY DIFFRACTION112F157 - 183
113X-RAY DIFFRACTION113F184 - 193
114X-RAY DIFFRACTION114F194 - 199
115X-RAY DIFFRACTION115F200 - 211
116X-RAY DIFFRACTION116F212 - 227
117X-RAY DIFFRACTION117F228 - 237
118X-RAY DIFFRACTION118F238 - 259
119X-RAY DIFFRACTION119F260 - 271
120X-RAY DIFFRACTION120F272 - 278
121X-RAY DIFFRACTION121G2 - 27
122X-RAY DIFFRACTION122G28 - 40
123X-RAY DIFFRACTION123G41 - 49
124X-RAY DIFFRACTION124G50 - 74
125X-RAY DIFFRACTION125G75 - 89
126X-RAY DIFFRACTION126G90 - 100
127X-RAY DIFFRACTION127G101 - 111
128X-RAY DIFFRACTION128G112 - 123
129X-RAY DIFFRACTION129G124 - 129
130X-RAY DIFFRACTION130G130 - 147
131X-RAY DIFFRACTION131G148 - 156
132X-RAY DIFFRACTION132G157 - 171
133X-RAY DIFFRACTION133G172 - 181
134X-RAY DIFFRACTION134G182 - 198
135X-RAY DIFFRACTION135G199 - 210
136X-RAY DIFFRACTION136G211 - 222
137X-RAY DIFFRACTION137G223 - 238
138X-RAY DIFFRACTION138G239 - 257
139X-RAY DIFFRACTION139G258 - 268
140X-RAY DIFFRACTION140G269 - 277
141X-RAY DIFFRACTION141H5 - 20
142X-RAY DIFFRACTION142H21 - 40
143X-RAY DIFFRACTION143H41 - 52
144X-RAY DIFFRACTION144H53 - 74
145X-RAY DIFFRACTION145H75 - 90
146X-RAY DIFFRACTION146H91 - 100
147X-RAY DIFFRACTION147H101 - 123
148X-RAY DIFFRACTION148H124 - 129
149X-RAY DIFFRACTION149H130 - 149
150X-RAY DIFFRACTION150H150 - 180
151X-RAY DIFFRACTION151H181 - 187
152X-RAY DIFFRACTION152H188 - 193
153X-RAY DIFFRACTION153H194 - 199
154X-RAY DIFFRACTION154H200 - 210
155X-RAY DIFFRACTION155H211 - 215
156X-RAY DIFFRACTION156H216 - 229
157X-RAY DIFFRACTION157H230 - 244
158X-RAY DIFFRACTION158H245 - 262
159X-RAY DIFFRACTION159H263 - 271
160X-RAY DIFFRACTION160H272 - 278
161X-RAY DIFFRACTION161I5 - 19
162X-RAY DIFFRACTION162I20 - 37
163X-RAY DIFFRACTION163I38 - 52
164X-RAY DIFFRACTION164I53 - 76
165X-RAY DIFFRACTION165I77 - 89
166X-RAY DIFFRACTION166I90 - 101
167X-RAY DIFFRACTION167I102 - 112
168X-RAY DIFFRACTION168I113 - 125
169X-RAY DIFFRACTION169I126 - 131
170X-RAY DIFFRACTION170I132 - 143
171X-RAY DIFFRACTION171I144 - 151
172X-RAY DIFFRACTION172I152 - 183
173X-RAY DIFFRACTION173I184 - 193
174X-RAY DIFFRACTION174I194 - 200
175X-RAY DIFFRACTION175I201 - 210
176X-RAY DIFFRACTION176I211 - 226
177X-RAY DIFFRACTION177I227 - 239
178X-RAY DIFFRACTION178I240 - 263
179X-RAY DIFFRACTION179I264 - 273
180X-RAY DIFFRACTION180I274 - 278
181X-RAY DIFFRACTION181J5 - 14
182X-RAY DIFFRACTION182J15 - 20
183X-RAY DIFFRACTION183J21 - 41
184X-RAY DIFFRACTION184J42 - 52
185X-RAY DIFFRACTION185J53 - 76
186X-RAY DIFFRACTION186J77 - 89
187X-RAY DIFFRACTION187J90 - 100
188X-RAY DIFFRACTION188J101 - 115
189X-RAY DIFFRACTION189J116 - 123
190X-RAY DIFFRACTION190J124 - 129
191X-RAY DIFFRACTION191J130 - 147
192X-RAY DIFFRACTION192J148 - 182
193X-RAY DIFFRACTION193J183 - 189
194X-RAY DIFFRACTION194J190 - 199
195X-RAY DIFFRACTION195J200 - 210
196X-RAY DIFFRACTION196J211 - 222
197X-RAY DIFFRACTION197J223 - 244
198X-RAY DIFFRACTION198J245 - 264
199X-RAY DIFFRACTION199J265 - 271
200X-RAY DIFFRACTION200J272 - 278

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る