Resolution: 1.7→29.123 Å / Num. obs: 21975 / % possible obs: 96.3 % / Observed criterion σ(I): -3 / Biso Wilson estimate: 17.497 Å2 / Rmerge F obs: 0.185 / Rmerge(I) obs: 0.058 / Rrim(I) all: 0.08 / Net I/σ(I): 10.63 / Num. measured all: 80152
Reflection shell
Diffraction-ID: 1
Resolution (Å)
Rmerge F obs
Rmerge(I) obs
Mean I/σ(I) obs
Num. measured obs
Num. possible
Num. unique obs
Rrim(I) all
% possible all
1.7-1.76
1.089
0.521
1.7
7757
4192
3959
0.715
94.4
1.76-1.83
0.818
0.396
2.2
7833
4166
4008
0.544
96.2
1.83-1.91
0.562
0.268
3.1
7716
4088
3939
0.368
96.4
1.91-2.02
0.379
0.19
4.3
8782
4661
4463
0.26
95.8
2.02-2.14
0.267
0.136
6.1
7458
3956
3786
0.187
95.7
2.14-2.31
0.171
0.09
8.4
8257
4342
4194
0.123
96.6
2.31-2.54
0.127
0.069
10.9
7957
4174
4036
0.094
96.7
2.54-2.9
0.09
0.05
14.5
8013
4188
4063
0.069
97
2.9-3.66
0.045
0.028
23
8215
4268
4152
0.039
97.3
3.66-29.123
0.027
0.021
31.5
8164
4247
4123
0.029
97.1
-
Phasing
Phasing
Method: MAD
-
Processing
Software
Name
Version
Classification
NB
REFMAC
5.2.0019
refinement
PHENIX
refinement
SHELX
phasing
MolProbity
3beta29
modelbuilding
XSCALE
datascaling
PDB_EXTRACT
3.006
dataextraction
XDS
datareduction
SHELXD
phasing
autoSHARP
phasing
Refinement
Method to determine structure: MAD / Resolution: 1.7→29.123 Å / Cor.coef. Fo:Fc: 0.97 / Cor.coef. Fo:Fc free: 0.955 / Occupancy max: 1 / Occupancy min: 0.5 / SU B: 3.552 / SU ML: 0.062 / TLS residual ADP flag: LIKELY RESIDUAL / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.093 / ESU R Free: 0.093 Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN ...Details: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. 2-METHYL-2,4-PENTANEDIOL MOLECULES FROM THE CRYSTALLIZATION BUFFER WERE MODELED INTO THE STRUCTURE. 5. AN UNKOWN LIGAND (UNL) WAS MODELED INTO THE PUTATIVE IN THE VICINITY OF A BOUND FLAVIN MONONUCLEOTIDE (FMN) COFACTOR.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.183
1124
5.1 %
RANDOM
Rwork
0.15
20817
-
-
obs
0.152
21941
98.47 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK
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