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- PDB-396d: CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC)... -
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Open data
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Basic information
Entry | Database: PDB / ID: 396d | ||||||||||||||||||||
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Title | CRYSTAL STRUCTURES OF TWO ISOMOPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND D(GGCCGCGGCC) | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / A-DNA / DOUBLE HELIX | Function / homology | DNA | ![]() Biological species | synthetic construct (others) | Method | ![]() ![]() Ban, C. / Sundaralingam, M. | ![]() ![]() Title: Crystal Structures of Two Isomophous A-DNA Decamers d(GTACGCGTAC) and d(GGCCGCGGCC) Authors: Ban, C. / Ramakrishnan, B. / Sundaralingam, M. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 14.7 KB | Display | ![]() |
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PDB format | ![]() | 9.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 317.5 KB | Display | ![]() |
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Full document | ![]() | 320.9 KB | Display | |
Data in XML | ![]() | 1.5 KB | Display | |
Data in CIF | ![]() | 2.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: DNA chain | Mass: 3046.981 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.97 Å3/Da / Density % sol: 58.55 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 7 Details: pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 291.00K Temp details: 291 | ||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Detector | Type: SIEMENS / Detector: AREA DETECTOR / Date: Jul 23, 1995 |
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Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.8→20 Å / Num. obs: 2916 / % possible obs: 96 % / Observed criterion σ(F): 1 / Redundancy: 4 % / Rmerge(I) obs: 0.025 |
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Processing
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Refinement | Resolution: 1.8→8 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 1.8→8 Å
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Refine LS restraints |
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Xplor file | Serial no: 1 / Param file: PARAM11.DNA |