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Yorodumi- PDB-342d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 342d | |||||||||||||||||||||
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Title | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | |||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / A-DNA / DOUBLE HELIX / MODIFIED | Function / homology | DNA | Function and homology information Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.1 Å | Authors | Mooers, B.H.M. / Eichman, B.F. / Ho, P.S. | Citation | Journal: To be Published | Title: Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA Authors: Mooers, B.H.M. / Eichman, B.F. / Ho, P.S. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 342d.cif.gz | 12.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb342d.ent.gz | 7.8 KB | Display | PDB format |
PDBx/mmJSON format | 342d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 342d_validation.pdf.gz | 359.5 KB | Display | wwPDB validaton report |
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Full document | 342d_full_validation.pdf.gz | 359.5 KB | Display | |
Data in XML | 342d_validation.xml.gz | 2.5 KB | Display | |
Data in CIF | 342d_validation.cif.gz | 2.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/42/342d ftp://data.pdbj.org/pub/pdb/validation_reports/42/342d | HTTPS FTP |
-Related structure data
Related structure data | 337dC 338dC 339dC 340dC 343dC 345dC 346dC C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: DNA chain | Mass: 2470.674 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.39 Å3/Da / Density % sol: 48.56 % |
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Crystal grow | Method: vapor diffusion / pH: 7 / Details: pH 7.00, VAPOR DIFFUSION |
Components of the solutions | Name: WATER |
-Data collection
Diffraction | Mean temperature: 298 K |
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Detector | Type: SIEMENS HI-STAR / Detector: AREA DETECTOR / Date: Jun 25, 1996 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.85→12.1 Å / Num. obs: 2153 / % possible obs: 76.97 % / Observed criterion σ(I): 2 / Redundancy: 2.5 % / Rmerge(I) obs: 0.048 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.1→8 Å / σ(F): 3 /
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Displacement parameters | Biso mean: 21.41 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→8 Å
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Refine LS restraints |
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Xplor file | Serial no: 1 / Param file: PAR.DNA / Topol file: TOP.DNA |