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- PDB-342d: STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE... -
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Open data
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Basic information
Entry | Database: PDB / ID: 342d | |||||||||||||||||||||
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Title | STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA | |||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / A-DNA / DOUBLE HELIX / MODIFIED | Function / homology | DNA | ![]() Method | ![]() ![]() ![]() Mooers, B.H.M. / Eichman, B.F. / Ho, P.S. | ![]() ![]() Title: Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA Authors: Mooers, B.H.M. / Eichman, B.F. / Ho, P.S. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 12.4 KB | Display | ![]() |
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PDB format | ![]() | 7.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 359.5 KB | Display | ![]() |
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Full document | ![]() | 359.5 KB | Display | |
Data in XML | ![]() | 2.5 KB | Display | |
Data in CIF | ![]() | 2.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 337dC ![]() 338dC ![]() 339dC ![]() 340dC ![]() 343dC ![]() 345dC ![]() 346dC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: DNA chain | Mass: 2470.674 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.39 Å3/Da / Density % sol: 48.56 % |
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Crystal grow | Method: vapor diffusion / pH: 7 / Details: pH 7.00, VAPOR DIFFUSION |
Components of the solutions | Name: WATER |
-Data collection
Diffraction | Mean temperature: 298 K |
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Detector | Type: SIEMENS HI-STAR / Detector: AREA DETECTOR / Date: Jun 25, 1996 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.85→12.1 Å / Num. obs: 2153 / % possible obs: 76.97 % / Observed criterion σ(I): 2 / Redundancy: 2.5 % / Rmerge(I) obs: 0.048 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 21.41 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→8 Å
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Refine LS restraints |
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Xplor file | Serial no: 1 / Param file: PAR.DNA / Topol file: TOP.DNA |