- PDB-2vng: Family 51 carbohydrate binding module from a family 98 glycoside ... -
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データを開く
IDまたはキーワード:
読み込み中...
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基本情報
登録情報
データベース: PDB / ID: 2vng
タイトル
Family 51 carbohydrate binding module from a family 98 glycoside hydrolase produced by Clostridium perfringens in complex with blood group A-trisaccharide ligand.
要素
CPE0329
キーワード
HYDROLASE / FAMILY 51 CARBOHYDRATE BINDING MODULE / CLOSTRIDIUM PERFRINGENS / FAMILY 98 GLYCOSIDE HYDROLASE / A-TRISACCHARIDE / BLOOD GROUP ANTIGEN
機能・相同性
機能・相同性情報
carbohydrate metabolic process / metal ion binding 類似検索 - 分子機能
NPCBM/NEW2 domain / Glycosyl hydrolase family 98, C-terminal / Glycosyl hydrolase family 98, central domain / Glycosyl hydrolase family 98 / Glycosyl hydrolase family 98 C-terminal domain / Glycosyl hydrolase family 98, putative carbohydrate-binding module / NPCBM domain superfamily / NPCBM/NEW2 domain / NPCBM / Polysaccharide lyase family 8-like, C-terminal ...NPCBM/NEW2 domain / Glycosyl hydrolase family 98, C-terminal / Glycosyl hydrolase family 98, central domain / Glycosyl hydrolase family 98 / Glycosyl hydrolase family 98 C-terminal domain / Glycosyl hydrolase family 98, putative carbohydrate-binding module / NPCBM domain superfamily / NPCBM/NEW2 domain / NPCBM / Polysaccharide lyase family 8-like, C-terminal / Galactose-binding-like domain superfamily / Jelly Rolls / Sandwich / Mainly Beta 類似検索 - ドメイン・相同性
Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein 類似検索 - 構成要素
SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED.
モノクロメーター: NI FILTER / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 1.5418 Å / 相対比: 1
反射
解像度: 1.4→56.8 Å / Num. obs: 57807 / % possible obs: 89.3 % / Observed criterion σ(I): 2 / 冗長度: 3.41 % / Rmerge(I) obs: 0.03 / Net I/σ(I): 18.1
反射 シェル
解像度: 1.4→1.43 Å / % possible all: 68.8
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解析
ソフトウェア
名称
バージョン
分類
REFMAC
5.2.0019
精密化
CrystalClear
データ削減
d*TREK
データスケーリング
精密化
構造決定の手法: OTHER 開始モデル: NONE 解像度: 1.4→56.8 Å / Cor.coef. Fo:Fc: 0.971 / Cor.coef. Fo:Fc free: 0.952 / SU B: 3.133 / SU ML: 0.057 / 交差検証法: THROUGHOUT / ESU R: 0.095 / ESU R Free: 0.084 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
反射数
%反射
Selection details
Rfree
0.235
3079
5.1 %
RANDOM
Rwork
0.184
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obs
0.187
57807
89.3 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK