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- PDB-2v78: Crystal structure of Sulfolobus solfataricus 2-keto-3-deoxyglucon... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2v78 | ||||||
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Title | Crystal structure of Sulfolobus solfataricus 2-keto-3-deoxygluconate kinase | ||||||
![]() | FRUCTOKINASE | ||||||
![]() | TRANSFERASE / KINASE / PFKB FAMILY CARBOHYDRATE KINASE / 2-KETO-3-DEOXYGLUCONATE KINASE | ||||||
Function / homology | ![]() 2-dehydro-3-deoxyglucono/galactono-kinase / 2-dehydro-3-deoxygalactonokinase activity / 2-dehydro-3-deoxygluconokinase activity / ketohexokinase activity / regulation of glycogen metabolic process / response to sucrose / response to fructose / fructose metabolic process / response to zinc ion / response to glucose ...2-dehydro-3-deoxyglucono/galactono-kinase / 2-dehydro-3-deoxygalactonokinase activity / 2-dehydro-3-deoxygluconokinase activity / ketohexokinase activity / regulation of glycogen metabolic process / response to sucrose / response to fructose / fructose metabolic process / response to zinc ion / response to glucose / response to insulin / phosphorylation / nucleotide binding / ATP binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Potter, J.A. / Theodossis, A. / Kerou, M. / Lamble, H.J. / Bull, S.D. / Hough, D.W. / Danson, M.J. / Taylor, G.L. | ||||||
![]() | ![]() Title: The Structure of Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate Kinase. Authors: Potter, J.A. / Kerou, M. / Lamble, H.J. / Bull, S.D. / Hough, D.W. / Danson, M.J. / Taylor, G.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 201.8 KB | Display | ![]() |
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PDB format | ![]() | 164.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 439.8 KB | Display | ![]() |
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Full document | ![]() | 446.4 KB | Display | |
Data in XML | ![]() | 37.7 KB | Display | |
Data in CIF | ![]() | 55.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: 1 / Ens-ID: 1 / Beg auth comp-ID: VAL / Beg label comp-ID: VAL / End auth comp-ID: PHE / End label comp-ID: PHE / Refine code: 4 / Auth seq-ID: 2 - 311 / Label seq-ID: 2 - 311
NCS oper:
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Components
#1: Protein | Mass: 34918.715 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.96 Å3/Da / Density % sol: 58.09 % / Description: NONE |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.934 Å / Relative weight: 1 |
Reflection | Resolution: 2→76.3 Å / Num. obs: 91205 / % possible obs: 97 % / Observed criterion σ(I): 7.2 / Redundancy: 12.8 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 26.8 |
Reflection shell | Resolution: 2→2.11 Å / Redundancy: 3.9 % / Rmerge(I) obs: 0.21 / Mean I/σ(I) obs: 7.2 / % possible all: 81.4 |
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Processing
Software | Name: REFMAC / Version: 5.2.0019 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 21.38 Å2
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Refinement step | Cycle: LAST / Resolution: 2→46.98 Å
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Refine LS restraints |
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