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Open data
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Basic information
Entry | Database: PDB / ID: 2mer | ||||||||||||||||||||
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Title | Structure of helix 69 from escherichia coli 23s ribosomal rna | ||||||||||||||||||||
![]() | RNA_(5'-R(P*![]() RNA / Pseudouridine / Helix 69 / Ribosomal | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing, molecular dynamics, torsion angle dynamics | Model details | lowest energy, model1 | ![]() Jiang, J. / Aduri, R. / Chow, C.S. / Santalucia, J. | ![]() ![]() Title: Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. Authors: Jiang, J. / Aduri, R. / Chow, C.S. / Santalucia, J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 122.6 KB | Display | ![]() |
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PDB format | ![]() | 100.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 343.9 KB | Display | ![]() |
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Full document | ![]() | 399.3 KB | Display | |
Data in XML | ![]() | 9.3 KB | Display | |
Data in CIF | ![]() | 13.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
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NMR ensembles |
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Components
#1: RNA chain | Mass: 6077.673 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing, molecular dynamics, torsion angle dynamics Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: CONVERGED LOWEST ENERGY STRUCTURES Conformers calculated total number: 100 / Conformers submitted total number: 10 |