+Open data
-Basic information
Entry | Database: PDB / ID: 2mci | ||||||
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Title | NMR structure of DNA duplex | ||||||
Components |
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Keywords | DNA / Nucleic acid / DNA duplex | ||||||
Function / homology | DNA Function and homology information | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Model details | lowest energy, model1 | ||||||
Authors | Brzezinska, J. / Gdaniec, Z. / Popenda, L. / Markiewicz, W.T. | ||||||
Citation | Journal: Biochim.Biophys.Acta / Year: 2014 Title: Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine. Authors: Brzezinska, J. / Gdaniec, Z. / Popenda, L. / Markiewicz, W.T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mci.cif.gz | 100.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2mci.ent.gz | 82.4 KB | Display | PDB format |
PDBx/mmJSON format | 2mci.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2mci_validation.pdf.gz | 319.8 KB | Display | wwPDB validaton report |
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Full document | 2mci_full_validation.pdf.gz | 382.7 KB | Display | |
Data in XML | 2mci_validation.xml.gz | 3.4 KB | Display | |
Data in CIF | 2mci_validation.cif.gz | 5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mc/2mci ftp://data.pdbj.org/pub/pdb/validation_reports/mc/2mci | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 2458.615 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: synthesized using phosphoramidite chemistry |
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#2: DNA chain | Mass: 2396.595 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: synthesized using phosphoramidite chemistry |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 | ||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |