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Yorodumi- PDB-2lzw: DNA duplex containing mispair-aligned O6G-heptylene-O6G interstra... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2lzw | ||||||||||||||||||||||||
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Title | DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link | ||||||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / INTERSTRAND CROSS-LINK | Function / homology | HEPTANE / DNA / DNA (> 10) | Function and homology information Biological species | synthetic construct (others) | Method | SOLUTION NMR / simulated annealing | Model details | minimized average structure, model 1 | Model type details | minimized average | Authors | Denisov, A.Y. / McManus, F.P. / Noronha, A.M. / Wilds, C.J. | Citation | Journal: Org.Biomol.Chem. / Year: 2017 | Title: Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase. Authors: Denisov, A.Y. / McManus, F.P. / O'Flaherty, D.K. / Noronha, A.M. / Wilds, C.J. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lzw.cif.gz | 169.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lzw.ent.gz | 139.8 KB | Display | PDB format |
PDBx/mmJSON format | 2lzw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lz/2lzw ftp://data.pdbj.org/pub/pdb/validation_reports/lz/2lzw | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 3373.222 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Chemical | ChemComp-HP6 / | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations and the lowest energy Conformers calculated total number: 20 / Conformers submitted total number: 11 |