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- PDB-2lzw: DNA duplex containing mispair-aligned O6G-heptylene-O6G interstra... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2lzw | ||||||||||||||||||||||||
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Title | DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link | ||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / INTERSTRAND CROSS-LINK | Function / homology | HEPTANE / DNA / DNA (> 10) | ![]() Biological species | synthetic construct (others) | Method | SOLUTION NMR / simulated annealing | Model details | minimized average structure, model 1 | Model type details | minimized average | ![]() Denisov, A.Y. / McManus, F.P. / Noronha, A.M. / Wilds, C.J. | ![]() ![]() Title: Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase. Authors: Denisov, A.Y. / McManus, F.P. / O'Flaherty, D.K. / Noronha, A.M. / Wilds, C.J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 169.8 KB | Display | ![]() |
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PDB format | ![]() | 139.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 408 KB | Display | ![]() |
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Full document | ![]() | 490.2 KB | Display | |
Data in XML | ![]() | 11.5 KB | Display | |
Data in CIF | ![]() | 13.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3373.222 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Chemical | ChemComp-HP6 / | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations and the lowest energy Conformers calculated total number: 20 / Conformers submitted total number: 11 |