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Open data
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Basic information
Entry | Database: PDB / ID: 2lbq | ||||||||||||||||||||||
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Title | NMR structure of i6A37_tyrASL | ||||||||||||||||||||||
![]() | RNA (5'-R(*![]() RNA / Tyrosyl-tRNA | Function / homology | RNA / RNA (> 10) | ![]() Biological species | ![]() ![]() Method | SOLUTION NMR / simulated annealing | Model details | closest to the average, model 1 | ![]() Denmon, A.P. / Wang, J. / Nikonowicz, E.P. | ![]() ![]() Title: Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr). Authors: Denmon, A.P. / Wang, J. / Nikonowicz, E.P. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 92.9 KB | Display | ![]() |
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PDB format | ![]() | 75.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 478.2 KB | Display | ![]() |
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Full document | ![]() | 588.8 KB | Display | |
Data in XML | ![]() | 25.1 KB | Display | |
Data in CIF | ![]() | 21.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2la9C ![]() 2lacC ![]() 2lbrC C: citing same article ( |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 5512.433 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 2.0 mM [U-100% 13C; U-100% 15N] i6A tyrASL, 10 mM potassium phosphate, 10 mM potassium chloride, 0.02 mM EDTA, 100% D2O Solvent system: 100% D2O | ||||||||||||||||||||
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Sample |
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Sample conditions | pH: 6.3 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | |||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 50 / Conformers submitted total number: 8 |