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Yorodumi- PDB-2l0r: Conformational Dynamics of the Anthrax Lethal Factor Catalytic Center -
+Open data
-Basic information
Entry | Database: PDB / ID: 2l0r | ||||||
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Title | Conformational Dynamics of the Anthrax Lethal Factor Catalytic Center | ||||||
Components | Lethal factor | ||||||
Keywords | HYDROLASE / TOXIN / protein / Anthrax Lethal Factor / catalytic domain / Zn metalloprotease / Bacillus Anthracis | ||||||
Function / homology | Function and homology information anthrax lethal factor endopeptidase / host cell cytosol / Uptake and function of anthrax toxins / metalloendopeptidase activity / metallopeptidase activity / toxin activity / proteolysis / zinc ion binding / extracellular region Similarity search - Function | ||||||
Biological species | Bacillus anthracis (anthrax bacterium) | ||||||
Method | SOLUTION NMR / Molexular mechanics | ||||||
Model details | minimized average, model 1 | ||||||
Authors | Dalkas, G.A. / Chasapis, C.T. / Gkazonis, P.V. / Bentrop, D.A. / Spyroulias, G.A. | ||||||
Citation | Journal: Biochemistry / Year: 2010 Title: Conformational dynamics of the anthrax lethal factor catalytic center. Authors: Dalkas, G.A. / Chasapis, C.T. / Gkazonis, P.V. / Bentrop, D. / Spyroulias, G.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2l0r.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb2l0r.ent.gz | 960.7 KB | Display | PDB format |
PDBx/mmJSON format | 2l0r.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2l0r_validation.pdf.gz | 360.9 KB | Display | wwPDB validaton report |
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Full document | 2l0r_full_validation.pdf.gz | 525.6 KB | Display | |
Data in XML | 2l0r_validation.xml.gz | 45.3 KB | Display | |
Data in CIF | 2l0r_validation.cif.gz | 79.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/l0/2l0r ftp://data.pdbj.org/pub/pdb/validation_reports/l0/2l0r | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12139.410 Da / Num. of mol.: 1 Fragment: C-terminal 106 residues catalytic core domain (Domain IV), UNP residues 705-809 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bacillus anthracis (anthrax bacterium) / Gene: BXA0172, GBAA_pXO1_0172, lef, pXO1-107 / Plasmid: pGEX-4T1 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) References: UniProt: P15917, anthrax lethal factor endopeptidase |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 0.6 mM [U-99% 13C; U-99% 15N] Anthrax LF C-term-1, 10 % % [U-99% 2H] D2O-2, 90 % % H2O-3, 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O | ||||||||||||||||
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Sample |
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Sample conditions | Ionic strength: Pi 50 / pH: 7.2 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: Molexular mechanics / Software ordinal: 1 Details: Energy minimization, bond lengths/angles optimization | ||||||||||||
NMR representative | Selection criteria: minimized average | ||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 31 / Conformers submitted total number: 31 |