- PDB-2k89: Solution structure of a novel Ubiquitin-binding domain from Human... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 2k89
Title
Solution structure of a novel Ubiquitin-binding domain from Human PLAA (PFUC, Gly76-Pro77 cis isomer)
Components
Phospholipase A-2-activating protein
Keywords
PROTEIN BINDING / Ubiquitin binding / WD repeat
Function / homology
Function and homology information
positive regulation of synaptic vesicle recycling / negative regulation of protein K63-linked ubiquitination / positive regulation of phospholipase A2 activity / ubiquitin recycling / phospholipase A2 activator activity / positive regulation of neuron migration / positive regulation of dendrite extension / ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / prostaglandin metabolic process / phospholipid metabolic process ...positive regulation of synaptic vesicle recycling / negative regulation of protein K63-linked ubiquitination / positive regulation of phospholipase A2 activity / ubiquitin recycling / phospholipase A2 activator activity / positive regulation of neuron migration / positive regulation of dendrite extension / ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / prostaglandin metabolic process / phospholipid metabolic process / ubiquitin binding / macroautophagy / nervous system development / cellular response to lipopolysaccharide / proteasome-mediated ubiquitin-dependent protein catabolic process / inflammatory response / synapse / signal transduction / extracellular exosome / nucleus / cytoplasm Similarity search - Function
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi