+Open data
-Basic information
Entry | Database: PDB / ID: 2j5u | ||||||
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Title | MreC Lysteria monocytogenes | ||||||
Components | MREC PROTEIN | ||||||
Keywords | CELL SHAPE REGULATION / BACTERIAL CELL SHAPE DETERMINING PROTEIN MREC | ||||||
Function / homology | Function and homology information | ||||||
Biological species | LISTERIA MONOCYTOGENES (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / OTHER / Resolution: 2.5 Å | ||||||
Authors | van den Ent, F. / Leaver, M. / Bendezu, F. / Errington, J. / de Boer, P. / Lowe, J. | ||||||
Citation | Journal: Mol.Microbiol. / Year: 2006 Title: Dimeric Structure of the Cell Shape Protein Mrec and its Functional Implications. Authors: Van Den Ent, F. / Leaver, M. / Bendezu, F. / Errington, J. / De Boer, P. / Lowe, J. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2j5u.cif.gz | 88.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2j5u.ent.gz | 68.4 KB | Display | PDB format |
PDBx/mmJSON format | 2j5u.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2j5u_validation.pdf.gz | 430.9 KB | Display | wwPDB validaton report |
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Full document | 2j5u_full_validation.pdf.gz | 443 KB | Display | |
Data in XML | 2j5u_validation.xml.gz | 16.9 KB | Display | |
Data in CIF | 2j5u_validation.cif.gz | 21.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/j5/2j5u ftp://data.pdbj.org/pub/pdb/validation_reports/j5/2j5u | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.999932, -0.011239, 0.003138), Vector: |
-Components
#1: Protein | Mass: 27628.818 Da / Num. of mol.: 2 / Fragment: RESIDUES 50-295 Source method: isolated from a genetically manipulated source Source: (gene. exp.) LISTERIA MONOCYTOGENES (bacteria) / Plasmid: PHIS17 / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): BL21 / References: UniProt: Q8Y6Y4 |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 4.16 Å3/Da / Density % sol: 70.17 % |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID29 / Wavelength: 0.9792 |
Detector | Type: ADSC CCD / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9792 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→20 Å / Num. obs: 26161 / % possible obs: 99.5 % / Observed criterion σ(I): 0 / Redundancy: 3.4 % / Biso Wilson estimate: 77.168 Å2 / Rmerge(I) obs: 0.1 / Net I/σ(I): 9.8 |
-Processing
Software |
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Refinement | Method to determine structure: OTHER / Resolution: 2.5→20 Å / Data cutoff high absF: 10000 / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: MAXIMUM LIKELIHOOD
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Solvent computation | Bsol: 41.2095 Å2 / ksol: 0.33611 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 75.588 Å2
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Refinement step | Cycle: LAST / Resolution: 2.5→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.5→2.53 Å / Rfactor Rfree error: 0.0129 / Total num. of bins used: 26
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Xplor file |
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