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- PDB-2hqb: Crystal Structure of a Transcriptional Activator of comK gene fro... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2hqb | ||||||
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Title | Crystal Structure of a Transcriptional Activator of comK gene from Bacillus halodurans | ||||||
![]() | Transcriptional activator of comK gene | ||||||
![]() | TRANSCRIPTION / Berkeley Structure Genomics Center Target 1957B / Structural Genomics / PSI / Protein Structure Initiative / Berkeley Structural Genomics Center / BSGC | ||||||
Function / homology | ABC transporter substrate-binding protein PnrA-like / ABC transporter substrate-binding protein PnrA-like / Response regulator / Periplasmic binding protein-like I / Rossmann fold / 3-Layer(aba) Sandwich / plasma membrane / Alpha Beta / Transcriptional activator of comK protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Xu, Q.S. / Berkeley Structural Genomics Center (BSGC) | ||||||
![]() | ![]() Title: Crystal structure of a transcriptional activator of comK gene from Bacillus halodurans. Authors: Xu, Q.S. / Ankoudinova, I. / Lou, Y. / Yokota, H. / Kim, R. / Kim, S.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 63.9 KB | Display | ![]() |
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PDB format | ![]() | 51.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 427.5 KB | Display | ![]() |
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Full document | ![]() | 437.2 KB | Display | |
Data in XML | ![]() | 13.4 KB | Display | |
Data in CIF | ![]() | 17.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 32899.359 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.32 Å3/Da / Density % sol: 71.56 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8.5 Details: 0.1M Tris, pH 8.5, 2.2M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Apr 1, 2005 / Details: mirrors |
Radiation | Monochromator: Double-crystal, Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97964 Å / Relative weight: 1 |
Reflection | Resolution: 2.7→42.2 Å / Num. all: 15980 / Num. obs: 15980 / % possible obs: 94.5 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 9.3 % / Biso Wilson estimate: 44.7 Å2 / Rmerge(I) obs: 0.082 / Rsym value: 0.082 / Net I/σ(I): 19.3 |
Reflection shell | Resolution: 2.7→2.8 Å / Redundancy: 5.1 % / Rmerge(I) obs: 0.358 / Mean I/σ(I) obs: 3 / Num. unique all: 1540 / Rsym value: 0.358 / % possible all: 94.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 52.0148 Å2 / ksol: 0.355405 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 58.7 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.7→42.24 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.7→2.8 Å / Rfactor Rfree error: 0.035 / Total num. of bins used: 10
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Xplor file |
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