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Open data
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Basic information
Entry | Database: PDB / ID: 2fgg | ||||||
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Title | Crystal Structure of Rv2632c | ||||||
![]() | Hypothetical protein Rv2632c/MT2708 | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / Rv2632c / TB target / PSI / Protein Structure Initiative / TB Structural Genomics Consortium / TBSGC | ||||||
Function / homology | Rv1738 / Rv2632c-like / Rv2632c-like superfamily / Rv2632c-like / Double Stranded RNA Binding Domain / 2-Layer Sandwich / Alpha Beta / Uncharacterized protein MT2708 / Uncharacterized protein Rv2632c![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Yu, M. / Bursey, E.H. / Radhakannan, T. / Segelke, B.W. / Lekin, T. / Toppani, D. / Kim, C.Y. / Kaviratne, T. / Woodruff, T. / Terwilliger, T.C. ...Yu, M. / Bursey, E.H. / Radhakannan, T. / Segelke, B.W. / Lekin, T. / Toppani, D. / Kim, C.Y. / Kaviratne, T. / Woodruff, T. / Terwilliger, T.C. / Hung, L.W. / TB Structural Genomics Consortium (TBSGC) | ||||||
![]() | ![]() Title: Crystal Structure of Rv2632c Authors: Yu, M. / Bursey, E.H. / Radhakannan, T. / Segelke, B.W. / Lekin, T. / Toppani, D. / Kim, C.Y. / Kaviratne, T. / Woodruff, T. / Terwilliger, T.C. / Hung, L.W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 25.4 KB | Display | ![]() |
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PDB format | ![]() | 19.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 427.7 KB | Display | ![]() |
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Full document | ![]() | 433.1 KB | Display | |
Data in XML | ![]() | 6.2 KB | Display | |
Data in CIF | ![]() | 7.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11263.204 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 53.66 % |
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Crystal grow | Temperature: 298 K / Method: evaporation / pH: 5.5 Details: 0.1M Sodium Cacodylate, 11.5% Isopropanol, pH 5.5, EVAPORATION, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jan 9, 2005 |
Radiation | Monochromator: Double-crystal, Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979259 Å / Relative weight: 1 |
Reflection | Resolution: 2.3→50 Å / Num. obs: 4800 / % possible obs: 72.4 % / Observed criterion σ(I): 2.5 / Redundancy: 10.6 % / Biso Wilson estimate: 53 Å2 / Rmerge(I) obs: 0.066 / Rsym value: 0.066 / Net I/σ(I): 43.2 |
Reflection shell | Highest resolution: 2.3 Å / Redundancy: 10.6 % / Rmerge(I) obs: 0.066 / Mean I/σ(I) obs: 43.2 / Num. unique all: 326 / Rsym value: 0.531 / % possible all: 94.7 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 65.993 Å2
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Refinement step | Cycle: LAST / Resolution: 2.3→19.4 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.305→2.364 Å / Total num. of bins used: 20
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Refinement TLS params. | Method: refined / Origin x: 4.0461 Å / Origin y: 14.4706 Å / Origin z: 12.5285 Å
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