- PDB-2ee8: Solution structure of three zf-C2H2 domains from mouse protein od... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 2ee8
Title
Solution structure of three zf-C2H2 domains from mouse protein odd-skipped-related 2 splicing isoform 2
Components
Protein odd-skipped-related 2
Keywords
GENE REGULATION / zinc binding / zf-C2H2 domain / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI
Function / homology
Function and homology information
pronephros development / embryonic skeletal joint development / embryonic skeletal joint morphogenesis / urogenital system development / embryonic skeletal limb joint morphogenesis / head development / osteoblast proliferation / embryonic skeletal system morphogenesis / mesonephros development / positive regulation of gastrulation ...pronephros development / embryonic skeletal joint development / embryonic skeletal joint morphogenesis / urogenital system development / embryonic skeletal limb joint morphogenesis / head development / osteoblast proliferation / embryonic skeletal system morphogenesis / mesonephros development / positive regulation of gastrulation / metanephros development / embryonic forelimb morphogenesis / embryonic hindlimb morphogenesis / bone morphogenesis / middle ear morphogenesis / embryo development ending in birth or egg hatching / odontogenesis / embryonic digit morphogenesis / roof of mouth development / eyelid development in camera-type eye / chondrocyte differentiation / positive regulation of bone mineralization / positive regulation of epithelial cell proliferation / RNA polymerase II transcription regulatory region sequence-specific DNA binding / DNA-binding transcription repressor activity, RNA polymerase II-specific / sequence-specific double-stranded DNA binding / DNA-binding transcription activator activity, RNA polymerase II-specific / sequence-specific DNA binding / cell differentiation / positive regulation of cell population proliferation / positive regulation of gene expression / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / nucleus / metal ion binding Similarity search - Function
Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 700 MHz
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Processing
NMR software
Name
Version
Developer
Classification
XwinNMR
3.5
Bruker
collection
NMRPipe
20060524
Delaglio, F.
processing
NMRView
5.0.4
Johnson, B.A.
dataanalysis
KUJIRA
0.9823
Kobayashi, N.
dataanalysis
CYANA
2.0.17
Guntert, P.
structuresolution
CYANA
2.0.17
Guntert, P.
refinement
Refinement
Method: torsion angle dynamics, restrained molecular dynamics Software ordinal: 1 Details: The each structure can't be superimposed since the structure has three zf-C2H2 domains and these domains are flexible
NMR representative
Selection criteria: lowest energy
NMR ensemble
Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy, target function Conformers calculated total number: 100 / Conformers submitted total number: 20
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