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Yorodumi- PDB-2dj9: Solution structure of growth-blocking peptide of the cabbage army... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2dj9 | ||||||
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Title | Solution structure of growth-blocking peptide of the cabbage armyworm, Mamestra brassicae | ||||||
Components | growth-blocking peptide | ||||||
Keywords | CYTOKINE / GROWTH-BLOCKING PEPTIDE | ||||||
Function / homology | Paralytic/GBP/PSP peptide / Paralytic/GBP/PSP peptide / : / Growth-blocking peptide Function and homology information | ||||||
Biological species | Mamestra brassicae (cabbage moth) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Umetsu, Y. / Kamiya, M. / Aizawa, T. / Kumaki, Y. / Demura, M. / Kawano, K. | ||||||
Citation | Journal: to be published Title: Solution Structure of Growth-blocking Peptide of the Cabbage Armyworm, Mamestra brassicae Authors: Umetsu, Y. / Kamiya, M. / Aizawa, T. / Kumaki, Y. / Demura, M. / Kawano, K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2dj9.cif.gz | 119.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2dj9.ent.gz | 97 KB | Display | PDB format |
PDBx/mmJSON format | 2dj9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2dj9_validation.pdf.gz | 333.2 KB | Display | wwPDB validaton report |
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Full document | 2dj9_full_validation.pdf.gz | 454.6 KB | Display | |
Data in XML | 2dj9_validation.xml.gz | 8.5 KB | Display | |
Data in CIF | 2dj9_validation.cif.gz | 13.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dj/2dj9 ftp://data.pdbj.org/pub/pdb/validation_reports/dj/2dj9 | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2508.873 Da / Num. of mol.: 1 / Fragment: residues 1-23 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mamestra brassicae (cabbage moth) / Plasmid: pET32b / Production host: Escherichia coli (E. coli) / References: GenBank: 47563661, UniProt: O96060*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 5mM MbGBP, 90% H2O, 10% D2O, pH4.4 / Solvent system: 90% H2O, 10% D2O, pH4.4 |
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Sample conditions | pH: 4.4 / Pressure: ambient / Temperature: 283 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 500 MHz |
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-Processing
NMR software |
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NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |