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Open data
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Basic information
Entry | Database: PDB / ID: 2dau | ||||||||||||||||||
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Title | DICKERSON-DREW DNA DODECAMER, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / DEOXYRIBONUCLEIC ACID / DODECAMER / MINIMIZED AVERAGE STRUCTURE | Function / homology | DNA / DNA (> 10) | ![]() Method | SOLUTION NMR / RESTRAINED MD | ![]() Denisov, A. / Bekiroglu, S. / Maltseva, T. / Sandstrom, A. / Altmann, K.-H. / Egli, M. / Chattopadhyaya, J. | ![]() ![]() Title: The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart. Authors: Denisov, A.Y. / Zamaratski, E.V. / Maltseva, T.V. / Sandstrom, A. / Bekiroglu, S. / Altmann, K.H. / Egli, M. / Chattopadhyaya, J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 23.6 KB | Display | ![]() |
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PDB format | ![]() | 15.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 238.8 KB | Display | ![]() |
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Full document | ![]() | 238.5 KB | Display | |
Data in XML | ![]() | 1.6 KB | Display | |
Data in CIF | ![]() | 1.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3663.392 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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Sample preparation
Sample conditions | pH: 7.0 / Temperature: 293 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DRX 500 / Manufacturer: Bruker / Model: DRX 500 / Field strength: 500 MHz |
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Processing
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NMR software |
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Refinement | Method: RESTRAINED MD / Software ordinal: 1 / Details: REFINEMENT DETAILS CAN BE FOUND IN THE PAPER. | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: LOWEST ENERGY, BEST AGREEMENT WITH NOE VOLUMES Conformers calculated total number: 9 / Conformers submitted total number: 1 |