登録情報 | データベース: PDB / ID: 2d6f |
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タイトル | Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln) |
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要素 | - Glutamyl-tRNA(Gln) amidotransferase subunit D
- Glutamyl-tRNA(Gln) amidotransferase subunit E
- tRNA
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キーワード | ligase/RNA / ligase / RNA / ligase-RNA COMPLEX |
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機能・相同性 | 機能・相同性情報
合成酵素; C-N結合を形成; C-N結合を形成するものうちグルタミンがアミド-N-供与体となるもの / glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity / aminoacyl-tRNA ligase activity / asparaginase activity / amino acid metabolic process / regulation of translational fidelity / translation / ATP binding / cytoplasm類似検索 - 分子機能 GatB domain, N-terminal subdomain / SH3 type barrels. - #520 / Glutamyl-tRNA(Gln) amidotransferase subunit E / Glutamyl-tRNA(Gln) amidotransferase subunit D / GatD, N-terminal superfamily / GatD, N-terminal / GatD N-terminal domain / GAD-like domain / Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 / Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic ...GatB domain, N-terminal subdomain / SH3 type barrels. - #520 / Glutamyl-tRNA(Gln) amidotransferase subunit E / Glutamyl-tRNA(Gln) amidotransferase subunit D / GatD, N-terminal superfamily / GatD, N-terminal / GatD N-terminal domain / GAD-like domain / Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 / Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic / Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site / Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E / GatB/GatE catalytic domain / Glutamyl-tRNA(Gln) amidotransferase subunit B signature. / Asn/Gln amidotransferase / GatB domain / GatB domain / Aspartyl/glutamyl-tRNA amidotransferase subunit B-like / Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 / GAD domain / GAD domain / GAD-like domain superfamily / Type I L-asparaginase family / L-asparaginase, N-terminal domain / Rossmann fold - #40 / Asparaginase/glutaminase, active site 1 / Asparaginase / glutaminase active site signature 1. / L-asparaginase, C-terminal / Asparaginase/glutaminase, active site 2 / Asparaginase/glutaminase, C-terminal / Glutaminase/Asparaginase C-terminal domain / Asparaginase / glutaminase active site signature 2. / Asparaginase / Asparaginase/glutaminase-like / L-asparaginase, N-terminal / Asparaginase/glutaminase-like superfamily / L-asparaginase, N-terminal domain superfamily / Asparaginase, N-terminal / Asparaginase / glutaminase domain profile. / Glutamine synthetase/guanido kinase, catalytic domain / Gyrase A; domain 2 / SH3 type barrels. / DNA polymerase; domain 1 / Roll / Rossmann fold / 2-Layer Sandwich / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Beta / Mainly Alpha / Alpha Beta類似検索 - ドメイン・相同性 RNA / RNA (> 10) / Glutamyl-tRNA(Gln) amidotransferase subunit D / Glutamyl-tRNA(Gln) amidotransferase subunit E類似検索 - 構成要素 |
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生物種 | ![](img/tx_archaea.gif) Methanothermobacter thermautotrophicus (古細菌) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3.15 Å |
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データ登録者 | Nureki, O. |
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引用 | ジャーナル: Science / 年: 2006 タイトル: Structural basis of RNA-dependent recruitment of glutamine to the genetic code 著者: Oshikane, H. / Sheppard, K. / Fukai, S. / Nakamura, Y. / Ishitani, R. / Numata, T. / Sherrer, R.L. / Feng, L. / Schmitt, E. / Panvert, M. / Blanquet, S. / Mechulam, Y. / Soll, D. / Nureki, O. |
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履歴 | 登録 | 2005年11月13日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
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改定 1.0 | 2006年7月11日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2008年4月30日 | Group: Version format compliance |
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改定 1.2 | 2011年7月13日 | Group: Version format compliance |
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改定 1.3 | 2024年3月13日 | Group: Data collection / Database references / Derived calculations カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_struct_conn_angle / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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