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- PDB-2afv: The Crystal Structure of Putative Precorrin Isomerase CbiC in Cob... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2afv | ||||||
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Title | The Crystal Structure of Putative Precorrin Isomerase CbiC in Cobalamin Biosynthesis | ||||||
![]() | cobalamin biosynthesis precorrin isomerase | ||||||
![]() | ISOMERASE | ||||||
Function / homology | ![]() cobalt-precorrin-8 methylmutase / cobalt-precorrin-8 methylmutase activity / precorrin-8X methylmutase activity / cobalamin biosynthetic process Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Xue, Y. / Wei, Z. | ||||||
![]() | ![]() Title: The crystal structure of putative precorrin isomerase CbiC in cobalamin biosynthesis Authors: Xue, Y. / Wei, Z. / Li, X. / Gong, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 96.6 KB | Display | ![]() |
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PDB format | ![]() | 73.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1 MB | Display | ![]() |
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Full document | ![]() | 1 MB | Display | |
Data in XML | ![]() | 20.2 KB | Display | |
Data in CIF | ![]() | 26.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 25887.881 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-CL / #3: Chemical | ChemComp-P6G / | #4: Chemical | ChemComp-P33 / | #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.533578 Å3/Da / Density % sol: 68.39 % |
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, hanging drop Details: PEG6000, Sodium Chloride, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Jul 2, 2004 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 3→19.87 Å / Num. all: 15306 / Num. obs: 15306 / % possible obs: 97.6 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Biso Wilson estimate: 42.4 Å2 |
Reflection shell | Resolution: 3→3.07 Å / % possible all: 95.6 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 23.0626 Å2 / ksol: 0.335522 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.5 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3→19.87 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3→3.19 Å / Rfactor Rfree error: 0.025 / Total num. of bins used: 6
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