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Yorodumi- PDB-239d: POLYMORPHISM IN LEFT HANDED DNA: THE CRYSTAL STRUCTURE OF D(CCCGGG)2 -
+Open data
-Basic information
Entry | Database: PDB / ID: 239d | ||||||||||||||||||
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Title | POLYMORPHISM IN LEFT HANDED DNA: THE CRYSTAL STRUCTURE OF D(CCCGGG)2 | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / Z-DNA / DOUBLE HELIX / MISMATCHED | Function / homology | DNA | Function and homology information Method | X-RAY DIFFRACTION / Resolution: 2.05 Å | Authors | Karthe, P. / Krishnaswamy, S. / Gautham, N. | Citation | Journal: To be Published / Year: 1996 | Title: Polymorphism in Left Handed DNA: The Crystal Structure of d(CCCGGG)2 Authors: Karthe, P. / Krishnaswamy, S. / Gautham, N. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 239d.cif.gz | 15 KB | Display | PDBx/mmCIF format |
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PDB format | pdb239d.ent.gz | 9.3 KB | Display | PDB format |
PDBx/mmJSON format | 239d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 239d_validation.pdf.gz | 319.8 KB | Display | wwPDB validaton report |
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Full document | 239d_full_validation.pdf.gz | 329.4 KB | Display | |
Data in XML | 239d_validation.xml.gz | 2.5 KB | Display | |
Data in CIF | 239d_validation.cif.gz | 3.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/39/239d ftp://data.pdbj.org/pub/pdb/validation_reports/39/239d | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 1810.205 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.67 Å3/Da / Density % sol: 26.18 % | ||||||||||||||||||||||||||||
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Crystal grow | Temperature: 296 K / Method: vapor diffusion, hanging drop / pH: 6.98 Details: pH 6.98, VAPOR DIFFUSION, HANGING DROP, temperature 296.00K | ||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Detector | Type: ENRAF-NONIUS CAD4 / Detector: DIFFRACTOMETER |
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Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Num. all: 1727 / Num. obs: 1704 / % possible obs: 44 % |
-Processing
Software |
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Refinement | Resolution: 2.05→8 Å / σ(F): 2
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 2.05→8 Å
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Refine LS restraints |
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