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- PDB-232d: THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) -
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Open data
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Basic information
Entry | Database: PDB / ID: 232d | ||||||||||||||||||
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Title | THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / A-DNA / DOUBLE HELIX / FLIPPED-OUT BASES | Function / homology | COBALT HEXAMMINE(III) / DNA | ![]() Method | ![]() ![]() ![]() Nunn, C.M. / Neidle, S. | ![]() ![]() Title: The high resolution crystal structure of the DNA decamer d(AGGCATGCCT). Authors: Nunn, C.M. / Neidle, S. #1: ![]() Title: The Structure of Chain-linked DNA as a Possible Model for the Transcription Bubble Authors: Nunn, C.M. / Neidle, S. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 17.4 KB | Display | ![]() |
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PDB format | ![]() | 10.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 329.9 KB | Display | ![]() |
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Full document | ![]() | 335.5 KB | Display | |
Data in XML | ![]() | 1.9 KB | Display | |
Data in CIF | ![]() | 2.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: DNA chain | Mass: 3045.005 Da / Num. of mol.: 1 / Source method: obtained synthetically | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.91 Å3/Da / Density % sol: 35.74 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 287 K / Method: vapor diffusion, sitting drop / pH: 7 Details: pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 287.00K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS Temperature: 287 K / pH: 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Source: ![]() ![]() ![]() |
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Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 1.3 Å / Num. obs: 6494 / Rmerge(I) obs: 0.063 |
Reflection | *PLUS Highest resolution: 1.3 Å / Lowest resolution: 19.2 Å / % possible obs: 98.2 % |
Reflection shell | *PLUS Highest resolution: 1.3 Å / Lowest resolution: 1.32 Å / Rmerge(I) obs: 0.34 / Mean I/σ(I) obs: 3.5 |
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Processing
Software |
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Refinement | Resolution: 1.3→8 Å / σ(F): 0
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 1.3→8 Å
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Refine LS restraints |
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Software | *PLUS Name: SHELXL-93 / Classification: refinement | |||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.3 Å / Lowest resolution: 8 Å / σ(F): 0 / Rfactor obs: 0.139 | |||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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