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- PDB-1zrp: SOLUTION-STATE STRUCTURE BY NMR OF ZINC-SUBSTITUTED RUBREDOXIN FR... -

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Entry
Database: PDB / ID: 1zrp
TitleSOLUTION-STATE STRUCTURE BY NMR OF ZINC-SUBSTITUTED RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS
ComponentsRUBREDOXIN
KeywordsELECTRON TRANSPORT
Function / homology
Function and homology information


alkane catabolic process / electron transfer activity / iron ion binding
Similarity search - Function
Rubredoxin / : / Rubredoxin, iron-binding site / Rubredoxin signature. / Rubrerythrin, domain 2 - #10 / Rubredoxin domain / Rubredoxin / Rubredoxin-like domain / Rubredoxin-like domain profile. / Rubrerythrin, domain 2 ...Rubredoxin / : / Rubredoxin, iron-binding site / Rubredoxin signature. / Rubrerythrin, domain 2 - #10 / Rubredoxin domain / Rubredoxin / Rubredoxin-like domain / Rubredoxin-like domain profile. / Rubrerythrin, domain 2 / Single Sheet / Mainly Beta
Similarity search - Domain/homology
Biological speciesPyrococcus furiosus (archaea)
MethodSOLUTION NMR
AuthorsBlake, P.R. / Park, J.B. / Zhou, Z.H. / Hare, D.R. / Adams, M.W.W. / Summers, M.F.
Citation
Journal: Protein Sci. / Year: 1992
Title: Solution-state structure by NMR of zinc-substituted rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus.
Authors: Blake, P.R. / Park, J.B. / Zhou, Z.H. / Hare, D.R. / Adams, M.W. / Summers, M.F.
#1: Journal: Protein Sci. / Year: 1992
Title: Comparison of the X-Ray Structure of Native Rubredoxin from Pyrococcus Furiosus with the NMR Structure of the Zinc-Substituted Protein
Authors: Blake, P.R. / Day, M.W. / Hsu, B.T. / Joshua-Tor, L. / Park, J.-B. / Hare, D.R. / Adams, M.W.W. / Rees, D.C. / Summers, M.F.
#2: Journal: J.Biomol.NMR / Year: 1992
Title: Quantitative Measurement of Small Through-Hydrogen-Bond and 'Through-Space' 1H-113Cd and 1H-199Hg J Couplings in Metal-Substituted Rubredoxin from Pyrococcus Furiosus
Authors: Blake, P.R. / Lee, B. / Summers, M.F. / Adams, M.W. / Park, J.B. / Zhou, Z.H. / Bax, A.
#3: Journal: J.Am.Chem.Soc. / Year: 1992
Title: Novel Observation of Nh...S(Cys) Hydrogen-Bond-Mediated Scalar Coupling in 113Cd-Substituted Rubredoxin from Pyrococcus Furiosus
Authors: Blake, P.R. / Park, J.B. / Adams, M.W.W. / Summers, M.F.
#4: Journal: Biochemistry / Year: 1991
Title: Determinants of Protein Hyperthermostability: Purification and Amino Acid Sequence of Rubredoxin from the Hyperthermophilic Archaebacterium Pyrococcus Furiosus and Secondary Structure of the Zinc Adduct by NMR
Authors: Blake, P.R. / Park, J.-B. / Bryant, F.O. / Aono, S. / Magnuson, J.K. / Eccleston, E. / Howard, J.B. / Summers, M.F. / Adams, M.W.W.
History
DepositionJul 10, 1992Processing site: BNL
Revision 1.0Oct 31, 1993Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Nov 29, 2017Group: Derived calculations / Other
Category: pdbx_database_status / pdbx_struct_assembly ...pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list / struct_conf / struct_conf_type
Item: _pdbx_database_status.process_site
Revision 1.4May 1, 2024Group: Data collection / Database references / Derived calculations
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_struct_conn_angle / struct_conn / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: RUBREDOXIN
hetero molecules


Theoretical massNumber of molelcules
Total (without water)5,9662
Polymers5,9011
Non-polymers651
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_5551
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)40 / -
Representative

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Components

#1: Protein RUBREDOXIN


Mass: 5900.532 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Pyrococcus furiosus (archaea) / References: UniProt: P24297
#2: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: Zn

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Processing

NMR softwareName: DSPACE / Developer: HARE RESEARCH INC. / Classification: refinement
NMR ensembleConformers submitted total number: 40

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