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Yorodumi- PDB-1ymz: CC45, An Artificial WW Domain Designed Using Statistical Coupling... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ymz | ||||||
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Title | CC45, An Artificial WW Domain Designed Using Statistical Coupling Analysis | ||||||
Components | CC45 | ||||||
Keywords | UNKNOWN FUNCTION / ARTIFICIAL PROTEIN / COMPUTATIONAL DESIGN | ||||||
Method | SOLUTION NMR / restrained molecular dynamics | ||||||
Authors | Socolich, M. / Lockless, S.W. / Russ, W.P. / Lee, H. / Gardner, K.H. / Ranganathan, R. | ||||||
Citation | Journal: Nature / Year: 2005 Title: Evolutionary information for specifying a protein fold. Authors: Socolich, M. / Lockless, S.W. / Russ, W.P. / Lee, H. / Gardner, K.H. / Ranganathan, R. | ||||||
History |
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Remark 999 | SEQUENCE Sequence numbering is based on an alignment of WW domains presented in Figure 1 of primary ...SEQUENCE Sequence numbering is based on an alignment of WW domains presented in Figure 1 of primary reference, leading to a gap in numbering between Glu 14 and Gly 16 |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ymz.cif.gz | 142.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ymz.ent.gz | 116.8 KB | Display | PDB format |
PDBx/mmJSON format | 1ymz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ymz_validation.pdf.gz | 337.5 KB | Display | wwPDB validaton report |
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Full document | 1ymz_full_validation.pdf.gz | 404 KB | Display | |
Data in XML | 1ymz_validation.xml.gz | 7.4 KB | Display | |
Data in CIF | 1ymz_validation.cif.gz | 11.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ym/1ymz ftp://data.pdbj.org/pub/pdb/validation_reports/ym/1ymz | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 5054.719 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: COMPUTATIONAL DESIGN |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: Structure was determined by a combination of 2D homonuclear and 3D heteronuclear-edited methods. |
-Sample preparation
Details |
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Sample conditions | Ionic strength: 100mM NaCl / pH: 7.0 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: restrained molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |