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Yorodumi- PDB-1xxx: Crystal structure of Dihydrodipicolinate Synthase (DapA, Rv2753c)... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 1xxx | ||||||
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| Title | Crystal structure of Dihydrodipicolinate Synthase (DapA, Rv2753c) from Mycobacterium tuberculosis | ||||||
Components | Dihydrodipicolinate synthase | ||||||
Keywords | LYASE / dihydrodipicolinate synthase / DapA / Rv2753c / Mycobacterium tuberculosis / lysine biosynthesis / Structural Genomics / PSI / Protein Structure Initiative / TB Structural Genomics Consortium / TBSGC | ||||||
| Function / homology | Function and homology information4-hydroxy-tetrahydrodipicolinate synthase / 4-hydroxy-tetrahydrodipicolinate synthase activity / diaminopimelate biosynthetic process / lysine biosynthetic process via diaminopimelate / plasma membrane / cytosol Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.28 Å | ||||||
Authors | Kefala, G. / Panjikar, S. / Janowski, R. / Weiss, M.S. / TB Structural Genomics Consortium (TBSGC) | ||||||
Citation | Journal: Biochem.J. / Year: 2008Title: Crystal structure and kinetic study of dihydrodipicolinate synthase from Mycobacterium tuberculosis. Authors: Kefala, G. / Evans, G.L. / Griffin, M.D. / Devenish, S.R. / Pearce, F.G. / Perugini, M.A. / Gerrard, J.A. / Weiss, M.S. / Dobson, R.C. | ||||||
| History |
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| Remark 999 | SEQUENCE Author states that residue number one is indeed a VAL based on TB genome data base. THE ...SEQUENCE Author states that residue number one is indeed a VAL based on TB genome data base. THE CORRESPONDING CHAIN IDS BETWEEN PDB FILE AND THE PAPER ARE AS FOLLOWING: E->F, F->E, H->G, G->H |
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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| PDBx/mmCIF format | 1xxx.cif.gz | 459.3 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb1xxx.ent.gz | 371.3 KB | Display | PDB format |
| PDBx/mmJSON format | 1xxx.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 1xxx_validation.pdf.gz | 459.3 KB | Display | wwPDB validaton report |
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| Full document | 1xxx_full_validation.pdf.gz | 475.8 KB | Display | |
| Data in XML | 1xxx_validation.xml.gz | 46.7 KB | Display | |
| Data in CIF | 1xxx_validation.cif.gz | 77.7 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xx/1xxx ftp://data.pdbj.org/pub/pdb/validation_reports/xx/1xxx | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 1o5kS S: Starting model for refinement |
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| Similar structure data | |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
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