[English] 日本語
![](img/lk-miru.gif)
- PDB-1wvq: Structure of conserved hypothetical protein PAE2307 from Pyrobacu... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1wvq | ||||||
---|---|---|---|---|---|---|---|
Title | Structure of conserved hypothetical protein PAE2307 from Pyrobaculum aerophilum | ||||||
![]() | hypothetical protein PAE2307 | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / Phosphorylated histidine | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lott, J.S. / Delbaere, L.T. / Banfield, M.J. / Sigrell-Simon, J.A. / Baker, E.N. | ||||||
![]() | ![]() Title: The structure of an ancient conserved domain establishes a structural basis for stable histidine phosphorylation and identifies a new family of adenosine-specific kinases. Authors: Lott, J.S. / Paget, B. / Johnston, J.M. / Delbaere, L.T. / Sigrell-Simon, J.A. / Banfield, M.J. / Baker, E.N. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 106.6 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 87.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 462.7 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 470.4 KB | Display | |
Data in XML | ![]() | 23.5 KB | Display | |
Data in CIF | ![]() | 32.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
| ||||||||
Details | Biological assembly is hexamer generated from trimer in asymmetric unit |
-
Components
#1: Protein | Mass: 18748.729 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-PO4 / | #3: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 50.88 % |
---|
-Data collection
Diffraction | Mean temperature: 110 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9792 Å / Relative weight: 1 |
Reflection | Num. all: 785088 / Num. obs: 785088 / % possible obs: 100 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 7.8 % / Biso Wilson estimate: 14.5 Å2 / Rmerge(I) obs: 0.042 / Net I/σ(I): 43 |
Reflection shell | Resolution: 1.45→1.5 Å / Rmerge(I) obs: 0.347 / Mean I/σ(I) obs: 5.7 / % possible all: 99.9 |
-
Processing
Software |
| |||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]()
| |||||||||||||||||||||||||
Solvent computation | Solvent model: FLAT MODEL / Bsol: 43.6347 Å2 / ksol: 0.370447 e/Å3 | |||||||||||||||||||||||||
Displacement parameters | Biso mean: 15.2 Å2
| |||||||||||||||||||||||||
Refine analyze |
| |||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.45→37.96 Å
| |||||||||||||||||||||||||
Refine LS restraints |
| |||||||||||||||||||||||||
LS refinement shell | Resolution: 1.45→1.5 Å / Rfactor Rfree error: 0.008 / Total num. of bins used: 10
| |||||||||||||||||||||||||
Xplor file |
|