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- PDB-1w7d: NMR Structure of Fasciclin-Like Protein From Rhodobacter sphaeroides -

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Basic information

Entry
Database: PDB / ID: 1w7d
TitleNMR Structure of Fasciclin-Like Protein From Rhodobacter sphaeroides
ComponentsBETA-IG-H3/FASCICLIN
KeywordsCELL ADHESION / FASCICLIN
Function / homology
Function and homology information


FAS1 domain / FAS1 domain / FAS1 domain / FAS1 domain superfamily / Fasciclin domain / FAS1/BIgH3 domain profile. / Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. / Roll / Mainly Beta
Similarity search - Domain/homology
Beta-Ig-H3/Fasciclin
Similarity search - Component
Biological speciesRHODOBACTER SPHAEROIDES (bacteria)
MethodSOLUTION NMR
Model type detailsMINIMIZED AVERAGE
AuthorsMoody, R. / Phillips-Jones, M.K. / Williamson, M.P.
CitationJournal: FEBS Open Bio / Year: 2013
Title: Structure and Function of a Bacterial Fasciclin I Domain Protein Elucidates Function of Related Cell Adhesion Proteins Such as Tgfbip and Periostin.
Authors: Moody, R.G. / Williamson, M.P.
History
DepositionSep 1, 2004Deposition site: PDBE / Processing site: PDBE
Revision 1.0Mar 8, 2006Provider: repository / Type: Initial release
Revision 1.1Jun 19, 2013Group: Database references / Derived calculations ...Database references / Derived calculations / Other / Refinement description / Source and taxonomy / Structure summary / Version format compliance
Revision 1.2Feb 5, 2014Group: Database references
Revision 1.3Jan 15, 2020Group: Data collection / Other / Category: pdbx_database_status / pdbx_nmr_software
Item: _pdbx_database_status.status_code_cs / _pdbx_database_status.status_code_mr / _pdbx_nmr_software.name
Revision 1.4Jun 14, 2023Group: Database references / Other / Category: database_2 / pdbx_database_status
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.status_code_nmr_data
Remark 650 HELIX DETERMINATION METHOD: AUTHOR PROVIDED.
Remark 700 SHEET DETERMINATION METHOD: AUTHOR PROVIDED.

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: BETA-IG-H3/FASCICLIN


Theoretical massNumber of molelcules
Total (without water)13,8481
Polymers13,8481
Non-polymers00
Water0
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / 100BEST WATER REFINED STRUCTURE
Representative

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Components

#1: Protein BETA-IG-H3/FASCICLIN / FASCICLIN-LIKE PROTEIN


Mass: 13848.373 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) RHODOBACTER SPHAEROIDES (bacteria) / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): BL21(DE3) / References: UniProt: Q3IXZ6
Sequence detailsRHODOBACTER SPHAEROIDES GENOME DATABASE

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR experiment
Conditions-IDExperiment-IDSolution-IDType
111NOESY
121HNHA
NMR detailsText: NONE

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Sample preparation

DetailsContents: 90% WATER/10% D2O, 50MM NAPHOS
Sample conditionsIonic strength: 50 mM / pH: 7.0 / Pressure: 1.0 atm / Temperature: 298.0 K

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NMR measurement

NMR spectrometerType: Bruker DMX / Manufacturer: Bruker / Model: DMX / Field strength: 800 MHz

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Processing

NMR software
NameVersionDeveloperClassification
CNS1.2BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARRENrefinement
Felixstructure solution
CNSstructure solution
RefinementSoftware ordinal: 1 / Details: WATER REFINEMENT
NMR ensembleConformer selection criteria: BEST WATER REFINED STRUCTURE / Conformers calculated total number: 100 / Conformers submitted total number: 1

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