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Yorodumi- PDB-1vtu: Structural characteristics of enantiomorphic DNA: Crystal analysi... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1vtu | ||||||||||||||||||||
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Title | Structural characteristics of enantiomorphic DNA: Crystal analysis of racemates of the D(CGCGCG) duplex | ||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / Z-DNA / DOUBLE HELIX / RACEMATE | Function / homology | DNA | Function and homology information Biological species | synthetic construct (others) | Method | X-RAY DIFFRACTION / Resolution: 2.2 Å | Authors | Doi, M. / Inoue, M. / Tomoo, K. / Ishida, T. / Ueda, Y. / Akagi, M. / Urata, H. | Citation | Journal: J.Am.Chem.Soc. / Year: 1993 | Title: Structural Characteristics of Enantiomorphic DNA: Crystal Analysis of Racemates of the d(CGCGCG) Duplex Authors: Doi, M. / Inoue, M. / Tomoo, K. / Ishida, T. / Ueda, Y. / Akagi, M. / Urata, H. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1vtu.cif.gz | 15.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1vtu.ent.gz | 10.1 KB | Display | PDB format |
PDBx/mmJSON format | 1vtu.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1vtu_validation.pdf.gz | 323.4 KB | Display | wwPDB validaton report |
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Full document | 1vtu_full_validation.pdf.gz | 327.4 KB | Display | |
Data in XML | 1vtu_validation.xml.gz | 1.7 KB | Display | |
Data in CIF | 1vtu_validation.cif.gz | 2.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vt/1vtu ftp://data.pdbj.org/pub/pdb/validation_reports/vt/1vtu | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 1810.205 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.08 Å3/Da / Density % sol: 40.93 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion, hanging drop / pH: 7 / Details: pH 7.00, VAPOR DIFFUSION, HANGING DROP | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Detector | Type: RIGAKU AFC-5 / Detector: DIFFRACTOMETER |
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Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Num. obs: 2930 |
-Processing
Software | Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 2.2→10 Å / σ(F): 3 /
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Refinement step | Cycle: LAST / Resolution: 2.2→10 Å
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Refine LS restraints |
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