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- PDB-1vtp: VACUOLAR TARGETING PEPTIDE FROM NA-PROPI -

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Basic information

Entry
Database: PDB / ID: 1vtp
TitleVACUOLAR TARGETING PEPTIDE FROM NA-PROPI
ComponentsVACUOLAR TARGETING PEPTIDE
KeywordsTARGETING PEPTIDE / NICOTIANA ALATA PROTEINASE INHIBITORS
Function / homologyProteinase inhibitor I20 / : / Potato type II proteinase inhibitor family / serine-type endopeptidase inhibitor activity / Proteinase inhibitor
Function and homology information
Biological speciesNicotiana alata (Persian tobacco)
MethodSOLUTION NMR
AuthorsNielsen, K.J. / Hill, J.M. / Anderson, M.A. / Craik, D.J.
Citation
Journal: Biochemistry / Year: 1996
Title: Synthesis and structure determination by NMR of a putative vacuolar targeting peptide and model of a proteinase inhibitor from Nicotiana alata.
Authors: Nielsen, K.J. / Hill, J.M. / Anderson, M.A. / Craik, D.J.
#1: Journal: Biochemistry / Year: 1995
Title: Structures of a Series of 6-kDa Trypsin Inhibitors Isolated from the Stigma of Nicotiana Alata
Authors: Nielsen, K.J. / Heath, R.L. / Anderson, M.A. / Craik, D.J.
#2: Journal: J.Mol.Biol. / Year: 1994
Title: The Three-Dimensional Solution Structure by 1H NMR of a 6-Kd Proteinase Inhibitor from the Stigmas of Nicotiana Alata
Authors: Nielsen, K.J. / Heath, R.L. / Anderson, M.A. / Craik, D.J.
History
DepositionNov 14, 1995Processing site: BNL
Revision 1.0Mar 8, 1996Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Mar 2, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure viewerMolecule:
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Assembly

Deposited unit
A: VACUOLAR TARGETING PEPTIDE


Theoretical massNumber of molelcules
Total (without water)2,8771
Polymers2,8771
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)20 / -
Representative

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Components

#1: Protein/peptide VACUOLAR TARGETING PEPTIDE / NA-PROPI


Mass: 2877.095 Da / Num. of mol.: 1 / Fragment: C-TERMINAL RESIDUES 29 - 54
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Nicotiana alata (Persian tobacco) / Organ: STIGMA / References: UniProt: Q40378

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR softwareName: X-PLOR / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 20

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