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Yorodumi- PDB-1vtf: STRUCTURE OF 5'-D(*(BRO)CP*GP*(BRO)CP*G)-3' IN COMPLEX WITH PROFLAVINE -
+Open data
-Basic information
Entry | Database: PDB / ID: 1vtf | ||||||||||||||||||||
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Title | STRUCTURE OF 5'-D(*(BRO)CP*GP*(BRO)CP*G)-3' IN COMPLEX WITH PROFLAVINE | ||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / RIGHT HANDED DNA / DOUBLE HELIX / COMPLEXED WITH DRUG / MODIFIED / DEOXYRIBONUCLEIC ACID | Function / homology | PROFLAVIN / DNA | Function and homology information Biological species | synthetic construct (others) | Method | X-RAY DIFFRACTION / Resolution: 2 Å | Authors | Westhof, E. / Hosur, M.V. / Sundaralingam, M. | Citation | Journal: Biochemistry / Year: 1988 | Title: Nonintercalative binding of proflavin to Z-DNA: structure of a complex between d(5BrC-G-5BrC-G) and proflavin. Authors: Westhof, E. / Hosur, M.V. / Sundaralingam, M. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1vtf.cif.gz | 21 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1vtf.ent.gz | 11.3 KB | Display | PDB format |
PDBx/mmJSON format | 1vtf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vt/1vtf ftp://data.pdbj.org/pub/pdb/validation_reports/vt/1vtf | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 1349.610 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Chemical | ChemComp-PRL / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal grow | Method: liquid diffusion / pH: 7 Details: ACETONE, SODIUM CACODYLATE, pH 7.00, LIQUID DIFFUSION | ||||||||||||||||||||||||||||
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Components of the solutions |
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-Data collection
Diffraction source | Source: SEALED TUBE / Wavelength: 1.5418 |
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Detector | Type: ENRAF-NONIUS CAD4 / Detector: DIFFRACTOMETER |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Highest resolution: 2 Å / Observed criterion σ(I): 2 |
-Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Resolution: 2→4.5 Å / σ(F): 4 /
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Refinement step | Cycle: LAST / Resolution: 2→4.5 Å
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