+Open data
-Basic information
Entry | Database: PDB / ID: 1ti1 | ||||||
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Title | crystal structure of a mutant DsbA | ||||||
Components | Thiol:disulfide interchange protein dsbA | ||||||
Keywords | OXIDOREDUCTASE / proline / thiol / detergent | ||||||
Function / homology | Function and homology information cellular response to antibiotic / protein disulfide isomerase activity / protein-disulfide reductase activity / outer membrane-bounded periplasmic space / periplasmic space / oxidoreductase activity Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.6 Å | ||||||
Authors | Kone, A. / Serre, L. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2005 Title: Intriguing conformation changes associated with the trans/cis isomerization of a prolyl residue in the active site of the DsbA C33A mutant. Authors: Ondo-Mbele, E. / Vives, C. / Kone, A. / Serre, L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ti1.cif.gz | 50.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ti1.ent.gz | 35.5 KB | Display | PDB format |
PDBx/mmJSON format | 1ti1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ti/1ti1 ftp://data.pdbj.org/pub/pdb/validation_reports/ti/1ti1 | HTTPS FTP |
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-Related structure data
Related structure data | 1u3aC 1dsbS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 21122.959 Da / Num. of mol.: 1 / Mutation: C33A Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Strain: O157:H7 / Gene: DSBA, PPFA, DSF, B3860, Z5392, ECS4783 / Production host: Escherichia coli (E. coli) / References: UniProt: P24991, UniProt: P0AEG4*PLUS |
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#2: Chemical | ChemComp-D12 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 45 % |
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Crystal grow | Temperature: 281 K / Method: vapor diffusion, hanging drop / pH: 8.5 Details: PEG 8000, Bicine, DDM, MPD, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 281K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID14-2 / Wavelength: 1 Å |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Dec 4, 2003 |
Radiation | Monochromator: NULL / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→55 Å / Num. all: 6214 / Num. obs: 6211 / % possible obs: 99.4 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 6.9 % / Rmerge(I) obs: 0.059 / Rsym value: 0.054 / Net I/σ(I): 8 |
Reflection shell | Resolution: 2.6→2.74 Å / Redundancy: 7 % / Rmerge(I) obs: 0.242 / Mean I/σ(I) obs: 3.3 / Num. unique all: 931 / Rsym value: 0.224 / % possible all: 100 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1DSB Resolution: 2.6→20.5 Å / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 56.2 Å2
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Refinement step | Cycle: LAST / Resolution: 2.6→20.5 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.6→2.76 Å / Rfactor Rfree error: 0.045
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Xplor file | Serial no: 1 / Param file: protein_rep.param / Topol file: protein.top |