[English] 日本語
![](img/lk-miru.gif)
- PDB-1tcs: CRYSTAL STRUCTURE OF TRICHOSANTHIN-NADPH COMPLEX AT 1.7 ANGSTROMS... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1tcs | ||||||
---|---|---|---|---|---|---|---|
Title | CRYSTAL STRUCTURE OF TRICHOSANTHIN-NADPH COMPLEX AT 1.7 ANGSTROMS RESOLUTION REVEALS ACTIVE-SITE ARCHITECTURE | ||||||
![]() | TRICHOSANTHIN | ||||||
![]() | PROTEIN SYNTHESIS INHIBITOR / TOXIN | ||||||
Function / homology | ![]() regulation of defense response to virus / rRNA N-glycosylase / rRNA N-glycosylase activity / defense response / toxin activity / negative regulation of translation Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Xiong, J.-P. / Xia, Z.-X. / Wang, Y. | ||||||
![]() | ![]() Title: Crystal structure of trichosanthin-NADPH complex at 1.7 A resolution reveals active-site architecture. Authors: Xiong, J.P. / Xia, Z.X. / Wang, Y. #1: ![]() Title: The Three-Dimensional Structure of Trichosanthin Refined at 2.7 Angstroms Resolution Authors: Xia, Z.-X. / Zhang, L. / Zhang, Z.-M. #2: ![]() Title: The Revision of Three-Dimensional Structure of Trichosanthin at 3 Angstroms Resolution Authors: Xia, Z.-X. / Zhang, Z.-M. / Zhang, L. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 65.2 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 47.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 476.2 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 501.1 KB | Display | |
Data in XML | ![]() | 10.6 KB | Display | |
Data in CIF | ![]() | 15 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 27166.770 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
---|---|
#2: Chemical | ChemComp-NDP / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.17 Å3/Da / Density % sol: 43.27 % |
---|---|
Crystal | *PLUS Density % sol: 39.7 % |
Crystal grow | *PLUS Method: unknown |
Components of the solutions | *PLUS Conc.: 5 mM / Common name: NADPH |
-Data collection
Reflection | Resolution: 1.7→8 Å / Num. obs: 22244 / % possible obs: 86.5 % / Observed criterion σ(I): 3 |
---|---|
Reflection | *PLUS Num. measured all: 79350 / Rmerge(I) obs: 0.0825 |
-
Processing
Software | Name: PROFFT / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor obs: 0.174 / Highest resolution: 1.7 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.7 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 8 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |