+Open data
-Basic information
Entry | Database: PDB / ID: 1qyp | ||||||
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Title | THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES | ||||||
Components | RNA POLYMERASE II | ||||||
Keywords | TRANSCRIPTION / RNA POLYMERASE II SUBUNIT / RPB9 / ZN RIBBON / HYPERTHERMOPHILIC / EXTREMOPHILE | ||||||
Function / homology | Function and homology information DNA-templated transcription / regulation of DNA-templated transcription / DNA binding / zinc ion binding Similarity search - Function | ||||||
Biological species | Thermococcus celer (archaea) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Wang, B. / Jones, D.N.M. / Kaine, B.P. / Weiss, M.A. | ||||||
Citation | Journal: Structure / Year: 1998 Title: High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases. Authors: Wang, B. / Jones, D.N. / Kaine, B.P. / Weiss, M.A. #1: Journal: Nature / Year: 1995 Title: Erratum. Structure of a New Nucleic-Acid-Binding Motif in Eukaryotic Transcriptional Elongation Factor Tfiis Authors: Qian, X. / Jeon, C. / Yoon, H. / Agarwal, K. / Weiss, M.A. #2: Journal: Nature / Year: 1993 Title: Structure of a New Nucleic-Acid-Binding Motif in Eukaryotic Transcriptional Elongation Factor Tfiis Authors: Qian, X. / Jeon, C. / Yoon, H. / Agarwal, K. / Weiss, M.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qyp.cif.gz | 442.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qyp.ent.gz | 369 KB | Display | PDB format |
PDBx/mmJSON format | 1qyp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1qyp_validation.pdf.gz | 343.7 KB | Display | wwPDB validaton report |
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Full document | 1qyp_full_validation.pdf.gz | 517.8 KB | Display | |
Data in XML | 1qyp_validation.xml.gz | 34.5 KB | Display | |
Data in CIF | 1qyp_validation.cif.gz | 53 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qy/1qyp ftp://data.pdbj.org/pub/pdb/validation_reports/qy/1qyp | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 6642.467 Da / Num. of mol.: 1 / Fragment: SUBUNIT RPB9, C-TERMINAL DOMAIN, RESIDUES 58 -110 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thermococcus celer (archaea) / Cell line: BL21 / Plasmid: PET15-B / Production host: Escherichia coli (E. coli) / Strain (production host): BL21 (DE3) LYSS / References: UniProt: Q56254 |
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#2: Chemical | ChemComp-ZN / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Sample conditions | pH: 6 / Temperature: 313 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-Processing
Software |
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NMR software | Name: X-PLOR / Developer: BRUNGER / Classification: refinement | ||||||||||||
NMR ensemble | Conformers submitted total number: 25 |