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- PDB-1qne: Crystal structure of the Adenovirus major late promoter TATA box ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1qne | ||||||
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Title | Crystal structure of the Adenovirus major late promoter TATA box bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). | ||||||
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![]() | TATA BOX-BINDING PROTEIN (TBP) / ADENOVIRUS MAJOR LATE PROMOTER (ADMLP) TATA BOX / TBP-TATA ELEMENT COMPLEX | ||||||
Function / homology | ![]() RNA polymerase II general transcription initiation factor activity / DNA-templated transcription initiation / DNA binding / nucleus Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Kim, J.L. / Burley, S.K. | ||||||
![]() | ![]() Title: TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Authors: Patikoglou, G.A. / Kim, J.L. / Sun, L. / Yang, S.-H. / Kodadek, T. / Burley, S.K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 129 KB | Display | ![]() |
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PDB format | ![]() | 97 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 394.8 KB | Display | ![]() |
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Full document | ![]() | 408.9 KB | Display | |
Data in XML | ![]() | 11.4 KB | Display | |
Data in CIF | ![]() | 20.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1qn3C ![]() 1qn4C ![]() 1qn5C ![]() 1qn6C ![]() 1qn7C ![]() 1qn8C ![]() 1qn9C ![]() 1qnaC ![]() 1qnbC ![]() 1qncC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.99999, 0.00172, -0.00289), Vector: |
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Components
#1: Protein | Mass: 22400.354 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: DNA chain | Mass: 4337.855 Da / Num. of mol.: 2 / Source method: obtained synthetically #3: DNA chain | Mass: 4221.751 Da / Num. of mol.: 2 / Source method: obtained synthetically #4: Water | ChemComp-HOH / | Compound details | DNA MOLECULES BOUND WITHIN THE SERIES CHAIN C, E CHAIN D, F 1QN3 GCTATAAACGGGCA TGCCCGTTTATAGC 1QN4 ...DNA MOLECULES BOUND WITHIN THE SERIES CHAIN C, E CHAIN D, F 1QN3 GCTATAAACG | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.84 Å3/Da / Density % sol: 56.71 % | ||||||||||||||||||||
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Crystal grow | pH: 6 / Details: pH 6.00 | ||||||||||||||||||||
Crystal grow | *PLUS Temperature: 4 ℃ / pH: 6.2 / Method: vapor diffusion | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Detector: AREA DETECTOR |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.92 Å / Relative weight: 1 |
Reflection | Resolution: 1.88→20 Å / Num. obs: 51793 / % possible obs: 93.2 % / Observed criterion σ(I): 0 / Redundancy: 3.5 % / Rsym value: 0.052 |
Reflection | *PLUS Rmerge(I) obs: 0.052 |
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Processing
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Refinement | Method to determine structure: OTHER / Resolution: 1.9→6 Å / Cross valid method: THROUGHOUT / σ(F): 2
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Refinement step | Cycle: LAST / Resolution: 1.9→6 Å
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Refine LS restraints |
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