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Yorodumi- PDB-1qch: STRUCTURE, DYNAMICS AND HYDRATION OF THE NOGALAMYCIN-D(ATGCAT)2 C... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1qch | ||||||||||||||||||
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Title | STRUCTURE, DYNAMICS AND HYDRATION OF THE NOGALAMYCIN-D(ATGCAT)2 COMPLEX DETERMINED BY NMR AND MOLECULAR DYNAMICS SIMULATIONS IN SOLUTION | ||||||||||||||||||
Components | 5'-D(*Keywords | DNA / NOGALAMYCIN / NOGALAMYCIN-DNA COMPLEX / NMR SPECTROSCOPY / ANTHRACYCLINE ANTIBIOTIC / HYDRATION | Function / homology | NOGALAMYCIN / DNA | Function and homology information Method | SOLUTION NMR / molecular dynamics | Authors | Williams, H.E.L. / Searle, M.S. | Citation | Journal: J.Mol.Biol. / Year: 1999 Title: Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution. Authors: Williams, H.E. / Searle, M.S. #1: Journal: J.Chem.Soc, Perkin Trans.1 / Year: 1998 Title: Structure of the nogalamycin-d(ATGCAT)(2) complex in solution: DNA recognition at an isolated TpG site Authors: Williams, H.E. / Searle, M.S. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qch.cif.gz | 144.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qch.ent.gz | 122.7 KB | Display | PDB format |
PDBx/mmJSON format | 1qch.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1qch_validation.pdf.gz | 399.9 KB | Display | wwPDB validaton report |
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Full document | 1qch_full_validation.pdf.gz | 400.1 KB | Display | |
Data in XML | 1qch_validation.xml.gz | 2.5 KB | Display | |
Data in CIF | 1qch_validation.cif.gz | 15.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qc/1qch ftp://data.pdbj.org/pub/pdb/validation_reports/qc/1qch | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 1808.229 Da / Num. of mol.: 2 / Source method: obtained synthetically / Details: SOLID PHASE SYNTHESIS #2: Chemical | ChemComp-NGM / | #3: Chemical | ChemComp-NA / #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
-Processing
Refinement | Method: molecular dynamics / Software ordinal: 1 / Details: 1NS RESTRAINED MOLECULAR DYNAMICS |
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NMR ensemble | Conformers submitted total number: 1 |