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Yorodumi- PDB-1pca: THREE DIMENSIONAL STRUCTURE OF PORCINE PANCREATIC PROCARBOXYPEPTI... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1pca | ||||||
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Title | THREE DIMENSIONAL STRUCTURE OF PORCINE PANCREATIC PROCARBOXYPEPTIDASE A. A COMPARISON OF THE A AND B ZYMOGENS AND THEIR DETERMINANTS FOR INHIBITION AND ACTIVATION | ||||||
Components | PROCARBOXYPEPTIDASE A PCPA | ||||||
Keywords | HYDROLASE(C-TERMINAL PEPTIDASE) | ||||||
Function / homology | Function and homology information carboxypeptidase A / leukotriene metabolic process / metallocarboxypeptidase activity / proteolysis / extracellular space / zinc ion binding Similarity search - Function | ||||||
Biological species | Sus scrofa (pig) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2 Å | ||||||
Authors | Guasch, A. / Coll, M. / Aviles, F.X. / Huber, R. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1992 Title: Three-dimensional structure of porcine pancreatic procarboxypeptidase A. A comparison of the A and B zymogens and their determinants for inhibition and activation. Authors: Guasch, A. / Coll, M. / Aviles, F.X. / Huber, R. #1: Journal: Embo J. / Year: 1991 Title: Three-Dimensional Structure of Porcine Procarboxypeptidase B: A Structural Basis of its Inactivity Authors: Coll, M. / Guasch, A. / Aviles, F.X. / Huber, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1pca.cif.gz | 100 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1pca.ent.gz | 75.6 KB | Display | PDB format |
PDBx/mmJSON format | 1pca.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1pca_validation.pdf.gz | 411.3 KB | Display | wwPDB validaton report |
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Full document | 1pca_full_validation.pdf.gz | 420.9 KB | Display | |
Data in XML | 1pca_validation.xml.gz | 10.9 KB | Display | |
Data in CIF | 1pca_validation.cif.gz | 17.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pc/1pca ftp://data.pdbj.org/pub/pdb/validation_reports/pc/1pca | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 45303.773 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Sus scrofa (pig) / References: UniProt: P09954, EC: 3.4.12.2 |
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#2: Chemical | ChemComp-ZN / |
#3: Chemical | ChemComp-CIT / |
#4: Chemical | ChemComp-VAL / |
#5: Water | ChemComp-HOH / |
Nonpolymer details | THE MOLECULE HAS A LIGAND WHICH HAS TENTATIVELY BEEN INTERPRETED AS A FREE AMINO ACID (VAL) IN THE ...THE MOLECULE HAS A LIGAND WHICH HAS TENTATIVEL |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.56 Å3/Da / Density % sol: 51.97 % |
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Crystal grow | *PLUS Temperature: 4 ℃ / pH: 5 / Method: vapor diffusion |
Components of the solutions | *PLUS Conc.: 1 M / Common name: sodium citrate |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2 Å / Num. all: 111015 / Num. obs: 27620 / Rmerge(I) obs: 0.046 |
-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Highest resolution: 2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 2 Å / Lowest resolution: 8 Å / Num. reflection obs: 26791 / Rfactor obs: 0.198 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 28.06 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: o_angle_d / Dev ideal: 2.104 |