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Yorodumi- PDB-1ohp: CRYSTAL STRUCTURE OF 5-3-KETOSTEROID ISOMERASE MUTANT D38N FROM P... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ohp | ||||||
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Title | CRYSTAL STRUCTURE OF 5-3-KETOSTEROID ISOMERASE MUTANT D38N FROM PSEUDOMONAS TESTOSTERONI COMPLEXED WITH 5ALPHA-ESTRAN-3,17-DIONE | ||||||
Components | STEROID DELTA-ISOMERASE | ||||||
Keywords | ISOMERASE / INHIBITOR | ||||||
Function / homology | Function and homology information steroid Delta-isomerase / steroid delta-isomerase activity / steroid metabolic process Similarity search - Function | ||||||
Biological species | PSEUDOMONAS TESTOSTERONI (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / DIRECT METHODS / Resolution: 1.53 Å | ||||||
Authors | Byun, M. / Kim, M.-S. / Oh, B.-H. | ||||||
Citation | Journal: To be Published Title: Crystal Structure of 5-3-Ketosteroid Isomerase Mutant D38N from Pseudomonas Testosteroni Complexed with 5Alpha-Estran-3,17-Dione Authors: Byun, M. / Kim, M.-S. / Oh, B.-H. | ||||||
History |
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Remark 700 | SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ohp.cif.gz | 113 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ohp.ent.gz | 93.3 KB | Display | PDB format |
PDBx/mmJSON format | 1ohp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/oh/1ohp ftp://data.pdbj.org/pub/pdb/validation_reports/oh/1ohp | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 13423.171 Da / Num. of mol.: 4 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) PSEUDOMONAS TESTOSTERONI (bacteria) / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): BL21(DE3) / References: UniProt: P00947, steroid Delta-isomerase #2: Chemical | ChemComp-ESR / #3: Water | ChemComp-HOH / | Compound details | CATALYTIC ACTIVITY: A 3-OXO-DELTA(5)-STEROID = A 3-OXO- DELTA(4)-STEROID. ENGINEERED RESIDUE IN ...CATALYTIC ACTIVITY: A 3-OXO-DELTA(5)-STEROID = A 3-OXO- DELTA(4)-STEROID. ENGINEERED | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.1 Å3/Da / Density % sol: 39.8 % |
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Crystal grow | pH: 4.6 Details: PEG 4K 24%, 0.2M AMMONIUM ACETATE, 0.1M SODIUM ACETATE PH 4.6 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: PAL/PLS / Beamline: 6B / Wavelength: 1.12714 |
Detector | Type: BRUKER PROTEUM 300 / Detector: CCD / Date: Nov 15, 2001 / Details: MIRRORS |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.12714 Å / Relative weight: 1 |
Reflection | Resolution: 1.53→30 Å / Num. obs: 67193 / % possible obs: 94.1 % / Observed criterion σ(I): 1 / Redundancy: 5 % / Rmerge(I) obs: 0.036 / Net I/σ(I): 34.4 |
-Processing
Software |
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Refinement | Method to determine structure: DIRECT METHODS / Resolution: 1.53→30 Å / σ(F): 1
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Refinement step | Cycle: LAST / Resolution: 1.53→30 Å
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Refine LS restraints |
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