[English] 日本語
![](img/lk-miru.gif)
- PDB-1ngo: NMR Structure of Putative 3' Terminator for B. Anthracis pagA Gen... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1ngo | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | NMR Structure of Putative 3' Terminator for B. Anthracis pagA Gene Coding Strand | ||||||||||||||||||||
![]() | 5'-D(*![]() ![]() Function / homology | ![]() ![]() Method | ![]() Model type details | minimized average | ![]() Shiflett, P.R. / Taylor-McCabe, K.J. / Michalczyk, R. / Silks, L.A. / Gupta, G. | ![]() ![]() Title: Structural Studies on the Hairpins at the 3' Untranslated Region of an Anthrax Toxin Gene Authors: Shiflett, P.R. / Taylor-McCabe, K.J. / Michalczyk, R. / Silks, L.A. / Gupta, G. History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 75.8 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 60.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: DNA chain | Mass: 8363.434 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: This sequence occurs on the coding strand of the 3' UTR of the pagA (110) gene of Bacillus anthracis. |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
| ||||||||||||||||||||||||
NMR details | Text: The structure was determined using standard 2D homonuclear techniques. |
-
Sample preparation
Details |
| |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample conditions |
| |||||||||||||||
Crystal grow![]() | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
---|---|
Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model![]() |
-
Processing
NMR software |
| ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: minimization molecular dynamics / Software ordinal: 1 Details: Structure is derived from 191 NOES of which, 25 involve exchangeable protons in the stem, 153 NOEs involve non-exchangeable protons in the stem, 13 NOEs involve non-exchangeable protons in ...Details: Structure is derived from 191 NOES of which, 25 involve exchangeable protons in the stem, 153 NOEs involve non-exchangeable protons in the stem, 13 NOEs involve non-exchangeable protons in the loop, 50 Distance restraints involve hydrogen bonds, and 44 dihedral angle restraints. | ||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||
NMR ensemble | Conformer selection criteria: Submitted conformers include average from molecular dynamics and 3 representative diverging structures. Conformers calculated total number: 100 / Conformers submitted total number: 4 |