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- PDB-1m1r: Reduced p222 crystal structure of the tetraheme cytochrome c of S... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1m1r | |||||||||
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Title | Reduced p222 crystal structure of the tetraheme cytochrome c of Shewanella oneidensis MR1 | |||||||||
![]() | SMALL tetraheme cytochrome c | |||||||||
![]() | ELECTRON TRANSPORT / reduced structure / atomic resolution | |||||||||
Function / homology | ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Leys, D. / Meyer, T.E. / Tsapin, A.I. / Nealson, K.H. / Cusanovich, M.A. / Van Beeumen, J.J. | |||||||||
![]() | ![]() Title: Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c Authors: Leys, D. / Meyer, T.E. / Tsapin, A.I. / Nealson, K.H. / Cusanovich, M.A. / Van Beeumen, J.J. | |||||||||
History |
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Remark 999 | SEQUENCE the sequence of this protein is derived from both N-terminal sequencing and from the ...SEQUENCE the sequence of this protein is derived from both N-terminal sequencing and from the sequenced genome of Shewanella oneidensis strain MR1. The protein sequence is, at present, not available in any protein sequence database. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 72 KB | Display | ![]() |
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PDB format | ![]() | 58.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 2.4 MB | Display | ![]() |
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Full document | ![]() | 2.4 MB | Display | |
Data in XML | ![]() | 12.6 KB | Display | |
Data in CIF | ![]() | 18.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1m1pC ![]() 1m1qSC C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 9673.621 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() | ||||
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#2: Chemical | #3: Chemical | ChemComp-HEC / #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.38 Å3/Da / Density % sol: 48.32 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 8.5 Details: ammonium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K | ||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 21 ℃ / PH range low: 9.2 / PH range high: 8.5 | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Aug 1, 2000 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9 Å / Relative weight: 1 |
Reflection | Resolution: 1.02→10 Å / Num. all: 49522 / Num. obs: 47386 / % possible obs: 96.3 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 |
Reflection | *PLUS Lowest resolution: 10 Å / Num. obs: 47690 / Num. measured all: 275007 / Rmerge(I) obs: 0.082 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1M1Q Resolution: 1.02→10 Å / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 1.02→10 Å
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Software | *PLUS Name: SHELXL / Version: 97 / Classification: refinement | ||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 10 Å | ||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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