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Yorodumi- PDB-1ltl: THE DODECAMER STRUCTURE OF MCM FROM ARCHAEAL M. THERMOAUTOTROPHICUM -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ltl | ||||||
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Title | THE DODECAMER STRUCTURE OF MCM FROM ARCHAEAL M. THERMOAUTOTROPHICUM | ||||||
Components | DNA replication initiator (Cdc21/Cdc54) | ||||||
Keywords | REPLICATION | ||||||
Function / homology | Function and homology information MCM complex / DNA replication initiation / DNA helicase activity / DNA helicase / hydrolase activity / DNA binding / ATP binding / metal ion binding Similarity search - Function | ||||||
Biological species | Methanothermobacter thermautotrophicus (archaea) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SIR, SAD / Resolution: 3 Å | ||||||
Authors | Fletcher, R.J. / Bishop, B.E. / Leon, R.P. / Sclafani, R.A. / Ogata, C.M. / Chen, X.S. | ||||||
Citation | Journal: Nat.Struct.Biol. / Year: 2003 Title: The Structure and function of MCM from archaeal M. Thermoautotrophicum Authors: Fletcher, R.J. / Bishop, B.E. / Leon, R.P. / Sclafani, R.A. / Ogata, C.M. / Chen, X.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ltl.cif.gz | 292.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ltl.ent.gz | 239.5 KB | Display | PDB format |
PDBx/mmJSON format | 1ltl.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lt/1ltl ftp://data.pdbj.org/pub/pdb/validation_reports/lt/1ltl | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 32336.662 Da / Num. of mol.: 6 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Methanothermobacter thermautotrophicus (archaea) Plasmid: PGEX-2T / Production host: Escherichia coli (E. coli) / References: UniProt: O27798 #2: Chemical | ChemComp-ZN / |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.35 Å3/Da / Density % sol: 63.3 % | ||||||||||||||||||||||||||||||
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Crystal grow | Details: Hanging drop | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 18 ℃ / pH: 8 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: APS / Beamline: 19-ID / Wavelength: 1.0332 Å |
Detector | Type: SBC-2 / Detector: CCD / Date: Dec 8, 2001 |
Radiation | Monochromator: DOUBLE CRYSTAL SI-111, DOUBLE CRYSTAL SI-220 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.0332 Å / Relative weight: 1 |
Reflection | Resolution: 3→49.83 Å / Num. obs: 58151 / Observed criterion σ(I): -3 |
Reflection | *PLUS Highest resolution: 3 Å / Lowest resolution: 50 Å / Num. obs: 56524 / Num. measured all: 835966 / Rmerge(I) obs: 99.9 / Rmerge F obs: 0.095 |
Reflection shell | *PLUS % possible obs: 100 % / Rmerge(I) obs: 0.47 |
-Processing
Software |
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Refinement | Method to determine structure: SIR, SAD / Resolution: 3→20 Å / Cross valid method: THROUGHOUT
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Refinement step | Cycle: LAST / Resolution: 3→20 Å
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Refinement | *PLUS Highest resolution: 3 Å / Lowest resolution: 25 Å / % reflection Rfree: 10 % | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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