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- PDB-1kpd: A MUTANT RNA PSEUDOKNOT THAT PROMOTES RIBOSOMAL FRAMESHIFTING IN ... -

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Basic information

Entry
Database: PDB / ID: 1kpd
TitleA MUTANT RNA PSEUDOKNOT THAT PROMOTES RIBOSOMAL FRAMESHIFTING IN MOUSE MAMMARY TUMOR VIRUS, NMR, MINIMIZED AVERAGE STRUCTURE
ComponentsRNA PSEUDOKNOT APKA27G
KeywordsRNA / RIBONUCLEIC ACID / RNA PSEUDOKNOT
Function / homologyRNA / RNA (> 10)
Function and homology information
MethodSOLUTION NMR
AuthorsKang, H. / Tinoco Junior, I.
Citation
Journal: Nucleic Acids Res. / Year: 1997
Title: A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus.
Authors: Kang, H. / Tinoco Jr., I.
#1: Journal: J.Mol.Biol. / Year: 1996
Title: Conformation of a Non-Frameshifting RNA Pseudoknot from Mouse Mammary Tumor Virus
Authors: Kang, H. / Hines, J.V. / Tinoco Junior, I.
History
DepositionJan 2, 1997Processing site: BNL
Revision 1.0Apr 1, 1997Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 23, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: RNA PSEUDOKNOT APKA27G


Theoretical massNumber of molelcules
Total (without water)10,3481
Polymers10,3481
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / -
Representative

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Components

#1: RNA chain RNA PSEUDOKNOT APKA27G


Mass: 10348.243 Da / Num. of mol.: 1 / Source method: obtained synthetically

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

NMR ensembleConformers submitted total number: 1

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