+Open data
-Basic information
Entry | Database: PDB / ID: 1jur | ||||||||||||||||||
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Title | Solution Structure of Helix III in Xenopus Oocyte 5S rRNA. | ||||||||||||||||||
Components | 5'-R(*Keywords | RNA / 5 S rRNA / bulge | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / torsion angle dynamics | Authors | Huber, P.W. / Rife, J.P. / Moore, P.B. | Citation | Journal: J.Mol.Biol. / Year: 2001 | Title: The structure of helix III in Xenopus oocyte 5 S rRNA: an RNA stem containing a two-nucleotide bulge. Authors: Huber, P.W. / Rife, J.P. / Moore, P.B. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jur.cif.gz | 129.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jur.ent.gz | 106.5 KB | Display | PDB format |
PDBx/mmJSON format | 1jur.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1jur_validation.pdf.gz | 323.2 KB | Display | wwPDB validaton report |
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Full document | 1jur_full_validation.pdf.gz | 381.6 KB | Display | |
Data in XML | 1jur_validation.xml.gz | 4.7 KB | Display | |
Data in CIF | 1jur_validation.cif.gz | 7.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ju/1jur ftp://data.pdbj.org/pub/pdb/validation_reports/ju/1jur | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 7135.346 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: The stem of this hairpin occurs naturally in Xenopus Oocytes. |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: In addition to the experimentally derived distance constraints and dihedral angle constraints, the structures were computed using 22 non-experimental constraints to ensure Watson-Crick Base ...Details: In addition to the experimentally derived distance constraints and dihedral angle constraints, the structures were computed using 22 non-experimental constraints to ensure Watson-Crick Base pairing and tetraloop formation. | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the lowest energy Conformers calculated total number: 30 / Conformers submitted total number: 9 |