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Yorodumi- PDB-1i8e: NMR ENSEMBLE OF ION-SELECTIVE LIGAND A22 FOR PLATELET INTEGRIN AL... -
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-Basic information
Entry | Database: PDB / ID: 1i8e | ||||||
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Title | NMR ENSEMBLE OF ION-SELECTIVE LIGAND A22 FOR PLATELET INTEGRIN ALPHAIIB-BETA3 | ||||||
Components | ION-SELECTIVE LIGAND A22 | ||||||
Keywords | CELL ADHESION / INTEGRIN / RGD | ||||||
Method | SOLUTION NMR / RESTRAINED MOLECULAR DYNAMICS, CHEMICAL SHIFT REFINEMENT. | ||||||
Authors | Smith, J.W. / Le Calvez, H. / Parra-Gessert, L. / Preece, N.E. / Jia, X. / Assa-Munt, N. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2002 Title: Selection and structure of ion-selective ligands for platelet integrin alpha IIb(beta) 3. Authors: Smith, J.W. / Le Calvez, H. / Parra-Gessert, L. / Preece, N.E. / Jia, X. / Assa-Munt, N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1i8e.cif.gz | 46.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1i8e.ent.gz | 35 KB | Display | PDB format |
PDBx/mmJSON format | 1i8e.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1i8e_validation.pdf.gz | 341.7 KB | Display | wwPDB validaton report |
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Full document | 1i8e_full_validation.pdf.gz | 414.1 KB | Display | |
Data in XML | 1i8e_validation.xml.gz | 4.7 KB | Display | |
Data in CIF | 1i8e_validation.cif.gz | 6.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/i8/1i8e ftp://data.pdbj.org/pub/pdb/validation_reports/i8/1i8e | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1310.548 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: The peptide was chemically synthesized:Commercial solid phase with cyclization with selective disulphide oxidation |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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NMR details | Text: THE ENSEMBLE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES (CIRCA 2000). |
-Sample preparation
Details | Contents: 3MG A22/ML / Solvent system: DMSO |
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Sample conditions | Ionic strength: 3MG/ML DMSO / Pressure: 1 atm / Temperature: 298.00 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITYPLUS / Manufacturer: Varian / Model: UNITYPLUS / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: RESTRAINED MOLECULAR DYNAMICS, CHEMICAL SHIFT REFINEMENT. Software ordinal: 1 Details: ENSEMBLE A22 IS BASED ON A TOTAL OF 170 NOE-DERIVED DISTANCE CONSTRAINTS, 10 DIHEDRAL ANGLE RESTRAINTS, 2 COVALENT -SS- BONDS N-ACETYL-CYS-1 TO CYS-11 AND CYS-3 TO CYS-9 RESPECTIVELY. ...Details: ENSEMBLE A22 IS BASED ON A TOTAL OF 170 NOE-DERIVED DISTANCE CONSTRAINTS, 10 DIHEDRAL ANGLE RESTRAINTS, 2 COVALENT -SS- BONDS N-ACETYL-CYS-1 TO CYS-11 AND CYS-3 TO CYS-9 RESPECTIVELY. REFINEMENTS INCORPORATED ALPHA PROTON AND ALPHA, BETA CARBON SHIFTS OF 11 RESIDUES. | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 15 |