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Yorodumi- PDB-1hpb: THE BACTERIAL PERIPLASMIC HISTIDINE-BINDING PROTEIN: STRUCTURE(SL... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1hpb | ||||||
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Title | THE BACTERIAL PERIPLASMIC HISTIDINE-BINDING PROTEIN: STRUCTURE(SLASH)FUNCTION ANALYSIS OF THE LIGAND-BINDING SITE AND COMPARISON WITH RELATED PROTEINS | ||||||
Components | HISTIDINE-BINDING PROTEIN | ||||||
Keywords | HISTIDINE-BINDING PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Salmonella typhimurium (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.5 Å | ||||||
Authors | Kim, S.H. / Oh, B.H. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1994 Title: The bacterial periplasmic histidine-binding protein. structure/function analysis of the ligand-binding site and comparison with related proteins. Authors: Oh, B.H. / Kang, C.H. / De Bondt, H. / Kim, S.H. / Nikaido, K. / Joshi, A.K. / Ames, G.F. #1: Journal: J.Biol.Chem. / Year: 1993 Title: Three-Dimensional Structures of the Periplasmic Lysine-, Arginine-, Ornithine-Binding Protein with and without a Ligand Authors: Oh, B.-H. / Pandit, J. / Kang, C.-H. / Nikaido, K. / Gokcen, S. / Ames, G.F. / Kim, S.-H. #2: Journal: J.Biol.Chem. / Year: 1992 Title: Crystal Structure of the Lysine-, Arginine-, Ornithine-Binding Protein from Salmonella Typhimurium at 2.7 Angstroms Resolution Authors: Kang, C.-H. / Shin, W.-C. / Yamagata, Y. / Gokcen, S. / Ames, G.F.-L. / Kim, S.-H. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hpb.cif.gz | 19.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hpb.ent.gz | 9.4 KB | Display | PDB format |
PDBx/mmJSON format | 1hpb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1hpb_validation.pdf.gz | 321.5 KB | Display | wwPDB validaton report |
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Full document | 1hpb_full_validation.pdf.gz | 321.5 KB | Display | |
Data in XML | 1hpb_validation.xml.gz | 1.2 KB | Display | |
Data in CIF | 1hpb_validation.cif.gz | 3.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hp/1hpb ftp://data.pdbj.org/pub/pdb/validation_reports/hp/1hpb | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 26189.613 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Salmonella typhimurium (bacteria) / References: UniProt: P02910 |
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#2: Chemical | ChemComp-HIS / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.18 Å3/Da / Density % sol: 43.7 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 9.5 / Method: vapor diffusion | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.5 Å / Num. obs: 6525 / % possible obs: 77.2 % / Rmerge(I) obs: 0.0821 |
-Processing
Software |
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Refinement | Rfactor Rwork: 0.192 / Rfactor obs: 0.192 / Highest resolution: 2.5 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.5 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 6 Å / Rfactor obs: 0.192 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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