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- PDB-1guc: SOLUTION NMR STRUCTURE OF AN RNA WITH TANDEM, SYMMETRIC GU MISMAT... -

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Basic information

Entry
Database: PDB / ID: 1guc
TitleSOLUTION NMR STRUCTURE OF AN RNA WITH TANDEM, SYMMETRIC GU MISMATCHES, 30 STRUCTURES
ComponentsRNA (5'-R(*GP*AP*GP*GP*UP*CP*UP*C)-3')
KeywordsRNA / RIBONUCLEIC ACID / G:U MISMATCH
Function / homologyRNA
Function and homology information
MethodSOLUTION NMR
AuthorsMcdowell, J.A. / Turner, D.H.
CitationJournal: Biochemistry / Year: 1996
Title: Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing.
Authors: McDowell, J.A. / Turner, D.H.
History
DepositionAug 23, 1996Processing site: BNL
Revision 1.0Feb 12, 1997Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 23, 2022Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_nmr_software / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site / _pdbx_nmr_software.name
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: RNA (5'-R(*GP*AP*GP*GP*UP*CP*UP*C)-3')
B: RNA (5'-R(*GP*AP*GP*GP*UP*CP*UP*C)-3')


Theoretical massNumber of molelcules
Total (without water)5,0852
Polymers5,0852
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)30 / -
Representative

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Components

#1: RNA chain RNA (5'-R(*GP*AP*GP*GP*UP*CP*UP*C)-3') / (RGAGGUCUC)2


Mass: 2542.561 Da / Num. of mol.: 2 / Source method: obtained synthetically / Details: ANTI-PARALLEL RNA DUPLEX, TANDEM GU MISMATCHES

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

SoftwareName: AMBER / Classification: refinement
NMR softwareName: Discover / Developer: BIOSYM / Classification: refinement
NMR ensembleConformers submitted total number: 30

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